Dedíková Pavlína, Pitonák Michal, Neogrády Pavel, Cernusák Ivan, Urban Miroslav
Department of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University, Mlynská dolina, SK-842 15 Bratislava, Slovakia.
J Phys Chem A. 2008 Jul 31;112(30):7115-23. doi: 10.1021/jp8033903. Epub 2008 Jul 2.
Interaction energies of the model H-bonded complexes, the formamide and formamidine dimers, as well as the stacked formaldehyde and ethylene dimers are calculated by the coupled cluster CCSD(T) method. These systems serve as a model for H-bonded and stacking interactions, typical in molecules participating in biological systems. We use the optimized virtual orbital space (OVOS) technique, by which the dimension of the space of virtual orbitals in coupled cluster CCSD(T) calculations can be significantly reduced. We demonstrate that when the space of virtual orbitals is reduced to 50% of the full space, which means reducing computational demands by 1 order of magnitude, the interaction energies for both H-bonded and stacked dimers are affected by no more than 0.1 kcal/mol. This error is much smaller than the error when interaction energies are calculated using limited basis sets.
通过耦合簇CCSD(T)方法计算了模型氢键复合物、甲酰胺和甲脒二聚体以及堆积的甲醛和乙烯二聚体的相互作用能。这些体系作为氢键和堆积相互作用的模型,在参与生物体系的分子中很典型。我们使用优化虚拟轨道空间(OVOS)技术,通过该技术可以显著降低耦合簇CCSD(T)计算中虚拟轨道空间的维度。我们证明,当虚拟轨道空间减少到全空间的50%时,这意味着计算需求降低了1个数量级,氢键和堆积二聚体的相互作用能受到的影响不超过0.1 kcal/mol。这个误差比使用有限基组计算相互作用能时的误差小得多。