Pitonák Michal, Riley Kevin E, Neogrády Pavel, Hobza Pavel
Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center of Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic.
Chemphyschem. 2008 Aug 4;9(11):1636-44. doi: 10.1002/cphc.200800286.
The CCSD(T) interaction energies for the H-bonded and stacked structures of the uracil dimer are determined at the aug-cc-pVDZ and aug-cc-pVTZ levels. On the basis of these calculations we can construct the CCSD(T) interaction energies at the complete basis set (CBS) limit. The most accurate energies, based either on direct extrapolation of the CCSD(T) correlation energies obtained with the aug-cc-pVDZ and aug-cc-pVTZ basis sets or on the sum of extrapolated MP2 interaction energies (from aug-cc-pVTZ and aug-cc-pVQZ basis sets) and extrapolated DeltaCCSD(T) correction terms [difference between CCSD(T) and MP2 interaction energies] differ only slightly, which demonstrates the reliability and robustness of both techniques. The latter values, which represent new standards for the H-bonding and stacking structures of the uracil dimer, differ from the previously published data for the S22 set by a small amount. This suggests that interaction energies of the S22 set are generated with chemical accuracy. The most accurate CCSD(T)/CBS interaction energies are compared with interaction energies obtained from various computational procedures, namely the SCS-MP2 (SCS: spin-component-scaled), SCS(MI)-MP2 (MI: molecular interaction), MP3, dispersion-augmented DFT (DFT-D), M06-2X, and DFT-SAPT (SAPT: symmetry-adapted perturbation theory) methods. Among these techniques, the best results are obtained with the SCS(MI)-MP2 method. Remarkably good binding energies are also obtained with the DFT-SAPT method. Both DFT techniques tested yield similarly good interaction energies. The large magnitude of the stacking energy for the uracil dimer, compared to that of the benzene dimer, is explained by attractive electrostatic interactions present in the stacked uracil dimer. These interactions force both subsystems to approach each other and the dispersion energy benefits from a shorter intersystem separation.
在aug-cc-pVDZ和aug-cc-pVTZ水平上确定了尿嘧啶二聚体氢键结构和堆积结构的CCSD(T)相互作用能。基于这些计算,我们可以构建完整基组(CBS)极限下的CCSD(T)相互作用能。基于aug-cc-pVDZ和aug-cc-pVTZ基组获得的CCSD(T)相关能的直接外推,或者基于外推的MP2相互作用能(来自aug-cc-pVTZ和aug-cc-pVQZ基组)与外推的DeltaCCSD(T)校正项[CCSD(T)和MP2相互作用能之间的差值]之和得到的最精确能量仅略有差异,这证明了两种技术的可靠性和稳健性。后一组值代表了尿嘧啶二聚体氢键和堆积结构的新标准,与之前发表的S22数据集的数据略有不同。这表明S22数据集的相互作用能具有化学精度。将最精确的CCSD(T)/CBS相互作用能与通过各种计算程序获得的相互作用能进行比较,即SCS-MP2(SCS:自旋分量缩放)、SCS(MI)-MP2(MI:分子相互作用)、MP3、色散增强DFT(DFT-D)、M06-2X和DFT-SAPT(SAPT:对称适应微扰理论)方法。在这些技术中,SCS(MI)-MP2方法获得了最佳结果。DFT-SAPT方法也获得了非常好的结合能。测试的两种DFT技术产生的相互作用能同样良好。与苯二聚体相比,尿嘧啶二聚体堆积能的幅度较大,这是由于堆积的尿嘧啶二聚体中存在有吸引力的静电相互作用。这些相互作用迫使两个子系统相互靠近,色散能受益于较短的系统间距离。