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HIV分离株I50V耐药性读数错误:核酸序列依赖性扩增法(NASBA)HIV-1 RNA QT内部校准物与HIV-1患者分离株的共同扩增可能会在基因型检测中导致I50V突变耐药性读数错误。

False I50V resistance readings of HIV isolates: co-amplification of NASBA HIV-1 RNA QT internal calibrators and HIV-1 patient isolates may lead to a false I50V mutation resistance reading in genotypic tests.

作者信息

Waléria-Aleixo A, Greco D B, Brindeiro R, Tanuri A

机构信息

Laboratório de Imunologia e Biologia Molecular, Infectious Diseases Service and School of Medicine, Federal University of Minas Gerais, Belo Horizonte, Brazil.

出版信息

Arch Virol. 2008;153(8):1489-94. doi: 10.1007/s00705-008-0138-2. Epub 2008 Jul 4.

DOI:10.1007/s00705-008-0138-2
PMID:18600296
Abstract

The I50V protease inhibitor (PI) resistance mutation was found in 87.4% of protease gene fragments sequenced from 199 nucleic acid isolates extracted using an NASBA virus load assay, performed between 1997 and 2001 in Brazil. This mutation is an amprenavir-related mutation, and at that particular time this PI was seldom used in Brazil. This mutation was found both in patients with and without therapeutic success. Q calibrators showed the PI resistance mutation I50V when directly amplified and sequenced from the 423-bp PCR product targeting protease gene. The majority of the patients' samples had a mixture of I50I and I50V; however, this artifact was nor seen when a 989-bp PCR product was used. These results show that RNA extracted using virus load kits need to be critically evaluated before being used in home-brew genotypic tests.

摘要

在1997年至2001年于巴西进行的一项研究中,采用核酸序列依赖性扩增(NASBA)病毒载量检测法从199份核酸分离物中提取的蛋白酶基因片段进行测序,结果发现87.4%存在I50V蛋白酶抑制剂(PI)耐药突变。该突变是与安普那韦相关的突变,而在那个特定时期,这种PI在巴西很少使用。在治疗成功和未成功的患者中均发现了这种突变。Q校准品在直接扩增并对靶向蛋白酶基因的423 bp PCR产物进行测序时显示出PI耐药突变I50V。大多数患者样本同时存在I50I和I50V;然而,当使用989 bp PCR产物时未观察到这种假象。这些结果表明,在用于自制基因分型检测之前,需要对使用病毒载量试剂盒提取的RNA进行严格评估。

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