Vilella Felipe, Alves Rui, Rodríguez-Manzaneque María Teresa, Bellí Gemma, Swaminathan Swarna, Sunnerhagen Per, Herrero Enrique
Departament de Ciències Mèdiques Bàsiques, Facultat de Medicina, Universitat de Lleida, Rovira Roure 44, Lleida 25198, Spain.
Comp Funct Genomics. 2004;5(4):328-41. doi: 10.1002/cfg.406.
A number of bacterial species, mostly proteobacteria, possess monothiol glutaredoxins homologous to the Saccharomyces cerevisiae mitochondrial protein Grx5, which is involved in iron-sulphur cluster synthesis. Phylogenetic profiling is used to predict that bacterial monothiol glutaredoxins also participate in the iron-sulphur cluster (ISC) assembly machinery, because their phylogenetic profiles are similar to the profiles of the bacterial homologues of yeast ISC proteins. High evolutionary co-occurrence is observed between the Grx5 homologues and the homologues of the Yah1 ferredoxin, the scaffold proteins Isa1 and Isa2, the frataxin protein Yfh1 and the Nfu1 protein. This suggests that a specific functional interaction exists between these ISC machinery proteins. Physical interaction analyses using low-definition protein docking predict the formation of strong and specific complexes between Grx5 and several components of the yeast ISC machinery. Two-hybrid analysis has confirmed the in vivo interaction between Grx5 and Isa1. Sequence comparison techniques and cladistics indicate that the other two monothiol glutaredoxins of S. cerevisiae, Grx3 and Grx4, have evolved from the fusion of a thioredoxin gene with a monothiol glutaredoxin gene early in the eukaryotic lineage, leading to differential functional specialization. While bacteria do not contain these chimaeric glutaredoxins, in many eukaryotic species Grx5 and Grx3/4-type monothiol glutaredoxins coexist in the cell.
许多细菌物种,主要是变形菌门细菌,拥有与酿酒酵母线粒体蛋白Grx5同源的单硫醇谷氧还蛋白,该蛋白参与铁硫簇的合成。系统发育谱分析用于预测细菌单硫醇谷氧还蛋白也参与铁硫簇(ISC)组装机制,因为它们的系统发育谱与酵母ISC蛋白的细菌同源物的谱相似。在Grx5同源物与Yah1铁氧还蛋白、支架蛋白Isa1和Isa2、frataxin蛋白Yfh1以及Nfu1蛋白的同源物之间观察到高度的进化共现。这表明这些ISC机制蛋白之间存在特定的功能相互作用。使用低分辨率蛋白质对接的物理相互作用分析预测Grx5与酵母ISC机制的几个组分之间会形成强的和特异性的复合物。双杂交分析已证实Grx5与Isa1在体内存在相互作用。序列比较技术和分支系统学表明,酿酒酵母的另外两种单硫醇谷氧还蛋白Grx3和Grx4,是在真核生物谱系早期由一个硫氧还蛋白基因与一个单硫醇谷氧还蛋白基因融合进化而来的,导致了不同的功能特化。虽然细菌不含有这些嵌合型谷氧还蛋白,但在许多真核生物物种中,Grx5和Grx3/4型单硫醇谷氧还蛋白在细胞中共存。