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NMR 在 Fe-S 蛋白成熟过程中对蛋白质-蛋白质网络的贡献。

The NMR contribution to protein-protein networking in Fe-S protein maturation.

机构信息

Magnetic Resonance Center CERM, University of Florence, Via Luigi Sacconi 6, Sesto Fiorentino, 50019, Florence, Italy.

Department of Chemistry, University of Florence, Via della Lastruccia 3, Sesto Fiorentino, 50019, Florence, Italy.

出版信息

J Biol Inorg Chem. 2018 Jun;23(4):665-685. doi: 10.1007/s00775-018-1552-x. Epub 2018 Mar 22.

Abstract

Iron-sulfur proteins were among the first class of metalloproteins that were actively studied using NMR spectroscopy tailored to paramagnetic systems. The hyperfine shifts, their temperature dependencies and the relaxation rates of nuclei of cluster-bound residues are an efficient fingerprint of the nature and the oxidation state of the Fe-S cluster. NMR significantly contributed to the analysis of the magnetic coupling patterns and to the understanding of the electronic structure occurring in [2Fe-2S], [3Fe-4S] and [4Fe-4S] clusters bound to proteins. After the first NMR structure of a paramagnetic protein was obtained for the reduced E. halophila HiPIP I, many NMR structures were determined for several Fe-S proteins in different oxidation states. It was found that differences in chemical shifts, in patterns of unobserved residues, in internal mobility and in thermodynamic stability are suitable data to map subtle changes between the two different oxidation states of the protein. Recently, the interaction networks responsible for maturing human mitochondrial and cytosolic Fe-S proteins have been largely characterized by combining solution NMR standard experiments with those tailored to paramagnetic systems. We show here the contribution of solution NMR in providing a detailed molecular view of "Fe-S interactomics". This contribution was particularly effective when protein-protein interactions are weak and transient, and thus difficult to be characterized at high resolution with other methodologies.

摘要

铁硫蛋白是最早使用专门针对顺磁体系的 NMR 光谱学进行积极研究的一类金属蛋白。超精细位移、其对温度的依赖性以及结合在团簇上的残基核的弛豫率是 Fe-S 团簇的性质和氧化态的有效指纹。NMR 极大地促进了对磁耦合模式的分析以及对发生在与蛋白质结合的 [2Fe-2S]、[3Fe-4S] 和 [4Fe-4S] 团簇中的电子结构的理解。在获得了还原型 E. halophila HiPIP I 的第一个顺磁蛋白的 NMR 结构之后,许多 NMR 结构在不同氧化态下的几种 Fe-S 蛋白中被确定。研究发现,化学位移、未观察到的残基模式、内部流动性和热力学稳定性的差异是适合映射蛋白两种不同氧化态之间细微变化的合适数据。最近,通过将溶液 NMR 标准实验与专门针对顺磁体系的实验相结合,人类线粒体和细胞质 Fe-S 蛋白成熟的相互作用网络已得到了广泛的描述。我们在此展示了溶液 NMR 在提供“Fe-S 相互作用组学”的详细分子视图方面的贡献。当蛋白质-蛋白质相互作用较弱且短暂时,这种贡献尤其有效,因此用其他方法学很难在高分辨率下进行表征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d443/6006191/4bfc7cb8f682/775_2018_1552_Fig1_HTML.jpg

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