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传染病病原体研究模型的模型库。

The model repository of the models of infectious disease agent study.

作者信息

Cooley Phillip C, Roberts D, Bakalov V D, Bikmal S, Cantor S, Costandine T, Ganapathi L, Golla B J, Grubbs G, Hollingsworth C, Li S, Qin Y, Savage William, Simoni D, Solano E, Wagener D

机构信息

RTI International, Research Triangle Park, NC 27709, USA.

出版信息

IEEE Trans Inf Technol Biomed. 2008 Jul;12(4):513-22. doi: 10.1109/TITB.2007.910354.

Abstract

The model repository (MREP) is a relational database management system (RDBMS) developed under the auspices of models of infectious disease agent study (MIDAS). The purpose of the MREP is to organize and catalog the models, results, and suggestions for using the MIDAS and to store them in a way to allow users to run models from an access-controlled disease MREP. The MREP contains source and object code of disease models developed by infectious disease modelers and tested in a production environment. Different versions of models used to describe various aspects of the same disease are housed in the repository. Models are linked to their developers and different versions of the codes are tied to Subversion, a version control tool. An additional element of the MREP will be to house, manage, and control access to a disease model results warehouse, which consists of output generated by the models contained in the MREP. The result tables and files are linked to the version of the model and the input parameters that collectively generated the results. The result tables are warehoused in a relational database that permits them to be easily identified, categorized, and downloaded.

摘要

模型存储库(MREP)是在传染病病原体研究模型(MIDAS)的支持下开发的关系数据库管理系统(RDBMS)。MREP的目的是对使用MIDAS的模型、结果和建议进行组织和编目,并以一种允许用户从访问控制的疾病MREP运行模型的方式进行存储。MREP包含传染病建模人员开发并在生产环境中测试的疾病模型的源代码和目标代码。用于描述同一疾病各个方面的不同版本的模型存放在该存储库中。模型与它们的开发者相关联,并且代码的不同版本与版本控制工具Subversion相关联。MREP的另一个要素将是存储、管理和控制对疾病模型结果仓库的访问,该仓库由MREP中包含的模型生成的输出组成。结果表和文件与共同生成结果的模型版本和输入参数相关联。结果表存储在关系数据库中,以便于识别、分类和下载。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fabe/7186033/96e14caaf44e/4358925-fig-1-source.jpg

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