Stokić Dejan, Hanel Rudolf, Thurner Stefan
Complex Systems Research Group, HNO, Medical University of Vienna, Währinger Gürtel 18-20, Vienna, Austria.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 1):061917. doi: 10.1103/PhysRevE.77.061917. Epub 2008 Jun 18.
We study a set of linearized catalytic reactions to model gene and protein interactions. The model is based on experimentally motivated interaction network topologies and is designed to capture some key properties of gene expression statistics. We impose a nonlinearity to the system by enforcing a boundary condition which guarantees non-negative concentrations of chemical substances. System stability is quantified by maximum Lyapunov exponents. We find that the non-negativity constraint leads to a drastic inflation of those regions in parameter space where the Lyapunov exponent exactly vanishes. Within the model this finding can be fully explained as a result of a symmetry breaking mechanism induced by the positivity constraint. The robustness of this finding with respect to network topologies and the role of intrinsic molecular and external noise is discussed. We argue that systems with inflated "edges of chaos" could be much more easily favored by natural selection than systems where the Lyapunov exponent vanishes only on a parameter set of measure zero.
我们研究了一组线性化催化反应,以模拟基因和蛋白质的相互作用。该模型基于由实验驱动的相互作用网络拓扑结构,旨在捕捉基因表达统计的一些关键特性。我们通过施加一个边界条件给系统引入非线性,该边界条件保证化学物质浓度非负。系统稳定性由最大李雅普诺夫指数来量化。我们发现,非负性约束导致参数空间中李雅普诺夫指数恰好为零的那些区域急剧膨胀。在该模型中,这一发现可以完全解释为正性约束引发的对称破缺机制的结果。讨论了这一发现相对于网络拓扑结构的稳健性以及内在分子噪声和外部噪声的作用。我们认为,与李雅普诺夫指数仅在零测度参数集上为零的系统相比,具有膨胀的“混沌边缘”的系统更容易受到自然选择的青睐。