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2
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Structural characterization of the active site of the PduO-type ATP:Co(I)rrinoid adenosyltransferase from Lactobacillus reuteri.来自罗伊氏乳杆菌的PduO型ATP:辅酶(I)类咕啉腺苷基转移酶活性位点的结构表征
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mSphere of Influence: Communication Is Complicated-Just Ask a Bacterial Cell.影响范围:交流很复杂——问问细菌细胞就知道了。
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Diverse bacterial microcompartment organelles.多样的细菌微区室细胞器
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本文引用的文献

1
Structural characterization of a human-type corrinoid adenosyltransferase confirms that coenzyme B12 is synthesized through a four-coordinate intermediate.一种人源类咕啉腺苷转移酶的结构表征证实辅酶B12是通过四配位中间体合成的。
Biochemistry. 2008 May 27;47(21):5755-66. doi: 10.1021/bi800132d. Epub 2008 May 2.
2
Construction and use of new cloning vectors for the rapid isolation of recombinant proteins from Escherichia coli.用于从大肠杆菌中快速分离重组蛋白的新型克隆载体的构建与应用
Plasmid. 2008 May;59(3):231-7. doi: 10.1016/j.plasmid.2008.01.001. Epub 2008 Mar 4.
3
Identification, characterization, and structure/function analysis of a corrin reductase involved in adenosylcobalamin biosynthesis.参与腺苷钴胺素生物合成的钴胺素还原酶的鉴定、表征及结构/功能分析
J Biol Chem. 2008 Apr 18;283(16):10813-21. doi: 10.1074/jbc.M710431200. Epub 2008 Feb 8.
4
Structural and functional analyses of the human-type corrinoid adenosyltransferase (PduO) from Lactobacillus reuteri.罗伊氏乳杆菌人源型类咕啉腺苷转移酶(PduO)的结构与功能分析
Biochemistry. 2007 Dec 4;46(48):13829-36. doi: 10.1021/bi701622j. Epub 2007 Nov 8.
5
Structural characterization of the active site of the PduO-type ATP:Co(I)rrinoid adenosyltransferase from Lactobacillus reuteri.来自罗伊氏乳杆菌的PduO型ATP:辅酶(I)类咕啉腺苷基转移酶活性位点的结构表征
J Biol Chem. 2007 Jan 26;282(4):2596-605. doi: 10.1074/jbc.M609557200. Epub 2006 Nov 22.
6
Spectroscopic and computational studies of the ATP:corrinoid adenosyltransferase (CobA) from Salmonella enterica: insights into the mechanism of adenosylcobalamin biosynthesis.肠炎沙门氏菌中ATP:类咕啉腺苷基转移酶(CobA)的光谱学和计算研究:对腺苷钴胺素生物合成机制的见解
J Am Chem Soc. 2005 Jun 22;127(24):8710-9. doi: 10.1021/ja042142p.
7
Spectroscopic evidence for the formation of a four-coordinate Co2+ cobalamin species upon binding to the human ATP:cobalamin adenosyltransferase.与人类ATP:钴胺素腺苷转移酶结合后形成四配位Co2+钴胺素物种的光谱证据。
J Am Chem Soc. 2005 Jun 1;127(21):7660-1. doi: 10.1021/ja050546r.
8
Biochemical evidence that the pduS gene encodes a bifunctional cobalamin reductase.pduS基因编码双功能钴胺素还原酶的生化证据。
Microbiology (Reading). 2005 Apr;151(Pt 4):1169-1177. doi: 10.1099/mic.0.27755-0.
9
Human ATP:Cob(I)alamin adenosyltransferase and its interaction with methionine synthase reductase.人ATP:钴胺素(I)腺苷转移酶及其与甲硫氨酸合酶还原酶的相互作用。
J Biol Chem. 2004 Nov 12;279(46):47536-42. doi: 10.1074/jbc.M405449200. Epub 2004 Aug 30.
10
The eutT gene of Salmonella enterica Encodes an oxygen-labile, metal-containing ATP:corrinoid adenosyltransferase enzyme.肠炎沙门氏菌的eutT基因编码一种对氧敏感的含金属的ATP:类咕啉腺苷转移酶。
J Bacteriol. 2004 Sep;186(17):5708-14. doi: 10.1128/JB.186.17.5708-5714.2004.

来自罗伊氏乳杆菌的ATP:类咕啉腺苷基转移酶PduO的动力学和光谱研究:底物特异性及对Co(II)类咕啉还原机制的见解

Kinetic and spectroscopic studies of the ATP:corrinoid adenosyltransferase PduO from Lactobacillus reuteri: substrate specificity and insights into the mechanism of Co(II)corrinoid reduction.

作者信息

Park Kiyoung, Mera Paola E, Escalante-Semerena Jorge C, Brunold Thomas C

机构信息

Department of Chemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.

出版信息

Biochemistry. 2008 Aug 26;47(34):9007-15. doi: 10.1021/bi800419e. Epub 2008 Aug 2.

DOI:10.1021/bi800419e
PMID:18672897
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2574751/
Abstract

The PduO-type ATP:corrinoid adenosyltransferase from Lactobacillus reuteri ( LrPduO) catalyzes the formation of the essential Co-C bond of adenosylcobalamin (coenzyme B 12) by transferring the adenosyl group from cosubstrate ATP to a transient Co (1+)corrinoid species generated in the enzyme active site. While PduO-type enzymes have previously been believed to be capable of adenosylating only Co (1+)cobalamin (Co (1+)Cbl (-)), our kinetic data obtained in this study provide in vitro evidence that LrPduO can in fact also utilize the incomplete corrinoid Co (1+)cobinamide (Co (1+)Cbi) as an alternative substrate. To explore the mechanism by which LrPduO overcomes the thermodynamically challenging reduction of its Co (2+)corrinoid substrates, we have examined how the enzyme active site alters the geometric and electronic properties of Co (2+)Cbl and Co (2+)Cbi (+) by using electronic absorption, magnetic circular dichroism, and electron paramagnetic resonance spectroscopic techniques. Our data reveal that upon binding to LrPduO that was preincubated with ATP, both Co (2+)corrinoids undergo a partial ( approximately 40-50%) conversion to distinct paramagnetic Co (2+) species. The spectroscopic signatures of these species are consistent with essentially four-coordinate, square-planar Co (2+) complexes, based on a comparison with the results obtained in our previous studies of related enzymes. Consequently, it appears that the general strategy employed by adenosyltransferases for effecting Co (2+) --> Co (1+) reduction involves the formation of an "activated" Co (2+)corrinoid intermediate that lacks any significant axial bonding interactions, to stabilize the redox-active, Co 3d z (2) -based molecular orbital.

摘要

来自罗伊氏乳杆菌的PduO型ATP:类咕啉腺苷转移酶(LrPduO)通过将辅底物ATP上的腺苷基团转移至在酶活性位点产生的瞬态Co(1+)类咕啉物种,催化腺苷钴胺素(辅酶B12)关键Co-C键的形成。虽然此前认为PduO型酶仅能使Co(1+)钴胺素(Co(1+)Cbl(-))腺苷化,但我们在本研究中获得的动力学数据提供了体外证据,表明LrPduO实际上也能利用不完全类咕啉Co(1+)钴胺酰胺(Co(1+)Cbi)作为替代底物。为探究LrPduO克服其Co(2+)类咕啉底物热力学上具有挑战性的还原作用的机制,我们使用电子吸收、磁圆二色性和电子顺磁共振光谱技术,研究了酶活性位点如何改变Co(2+)Cbl和Co(2+)Cbi(+)的几何和电子性质。我们的数据表明,与预先用ATP孵育的LrPduO结合后,两种Co(2+)类咕啉均会部分(约40 - 50%)转化为不同的顺磁性Co(2+)物种。基于与我们之前对相关酶的研究结果的比较,这些物种的光谱特征与基本上为四配位的平面正方形Co(2+)配合物一致。因此,腺苷转移酶用于实现Co(2+)→Co(1+)还原的一般策略似乎涉及形成一种“活化的”Co(2+)类咕啉中间体,该中间体缺乏任何显著的轴向键合相互作用,以稳定基于Co 3d z(2)的氧化还原活性分子轨道。