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解析一种异常快速的寄生酶:人隐孢子虫胸苷酸合成酶中叶酸尾部结合残基决定底物定位和催化作用

Explaining an unusually fast parasitic enzyme: folate tail-binding residues dictate substrate positioning and catalysis in Cryptosporidium hominis thymidylate synthase.

作者信息

Martucci W Edward, Vargo Melissa A, Anderson Karen S

机构信息

Department of Molecular Biophysics and Biochemistry, Yale University School of Medicine, 333 Cedar Street, New Haven, Connecticut 06520, USA.

出版信息

Biochemistry. 2008 Aug 26;47(34):8902-11. doi: 10.1021/bi800466z. Epub 2008 Aug 2.

Abstract

The essential enzyme TS-DHFR from Cryptosporidium hominis undergoes an unusually rapid rate of catalysis at the conserved TS domain, facilitated by two nonconserved residues, Ala287 and Ser290, in the folate tail-binding region. Mutation of these two residues to their conserved counterparts drastically affects multiple steps of the TS catalytic cycle. We have determined the crystal structures of all three mutants (A287F, S290G, and A287F/S290G) in complex with active site ligands dUMP and CB3717. The structural data show two effects of the mutations: an increased distance between the ligands in the active site and increased flexibility of the folate ligand in the partially open enzyme state that precedes conformational change to the active catalytic state. The latter effect is able to be rescued by the mutants containing the A287F mutation. In addition, the conserved water network of TS is altered in each of the mutants. The structural results point to a role of the folate tail-binding residues in closely positioning ChTS ligands and restricting ligand flexibility in the partially open state to allow for a rapid transition to the active closed state and enhanced rate of catalysis. These results provide an explanation on how folate tail-binding residues at one end of the active site affect long-range interactions throughout the TS active site and validate these residues as targets for species-specific drug design.

摘要

来自人隐孢子虫的关键酶TS-DHFR在保守的TS结构域催化速率异常快,这得益于叶酸尾结合区域中两个非保守残基Ala287和Ser290的作用。将这两个残基突变为其保守对应物会极大地影响TS催化循环的多个步骤。我们已经确定了所有三个突变体(A287F、S290G和A287F/S290G)与活性位点配体dUMP和CB3717形成复合物的晶体结构。结构数据显示了突变的两种影响:活性位点中配体之间的距离增加,以及在向活性催化状态构象变化之前的部分开放酶状态下叶酸配体的灵活性增加。后一种影响能够被含有A287F突变的突变体挽救。此外,每个突变体中TS的保守水网络都发生了改变。结构结果表明叶酸尾结合残基在紧密定位ChTS配体以及限制部分开放状态下配体灵活性方面的作用,以允许快速转变为活性封闭状态并提高催化速率。这些结果解释了活性位点一端的叶酸尾结合残基如何影响整个TS活性位点的远程相互作用,并验证了这些残基作为物种特异性药物设计靶点的有效性。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
5
A binding mechanism in protein-nucleotide interactions: implication for U1A RNA binding.
Proc Natl Acad Sci U S A. 2005 Mar 15;102(11):3954-9. doi: 10.1073/pnas.0500888102. Epub 2005 Mar 7.
6
Coot: model-building tools for molecular graphics.
Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32. doi: 10.1107/S0907444904019158. Epub 2004 Nov 26.
7
Refinement of macromolecular structures by the maximum-likelihood method.
Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55. doi: 10.1107/S0907444996012255.
8
The CCP4 suite: programs for protein crystallography.
Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3. doi: 10.1107/S0907444994003112.

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