Crump Byron C, Koch Evamaria W
University of Maryland Center for Environmental Science, Horn Point Laboratory, 2020 Horns Point Rd., Cambridge, MD 21613, USA.
Appl Environ Microbiol. 2008 Oct;74(19):5948-57. doi: 10.1128/AEM.00952-08. Epub 2008 Aug 1.
Symbiotic relationships between microbes and plants are common and well studied in terrestrial ecosystems, but little is known about such relationships in aquatic environments. We compared the phylogenetic diversities of leaf- and root-attached bacteria from four species of aquatic angiosperms using denaturing gradient gel electrophoresis (DGGE) and DNA sequencing of PCR-amplified 16S rRNA genes. Plants were collected from three beds in Chesapeake Bay at sites characterized as freshwater (Vallisneria americana), brackish (Potomogeton perfoliatus and Stuckenia pectinata), and marine (Zostera marina). DGGE analyses showed that bacterial communities were very similar for replicate samples of leaves from canopy-forming plants S. pectinata and P. perfoliatus and less similar for replicate samples of leaves from meadow-forming plants Z. marina and V. americana and of roots of all species. In contrast, bacterial communities differed greatly among plant species and between leaves and roots. DNA sequencing identified 154 bacterial phylotypes, most of which were restricted to single plant species. However, 12 phylotypes were found on more than one plant species, and several of these phylotypes were abundant in clone libraries and represented the darkest bands in DGGE banding patterns. Root-attached phylotypes included relatives of sulfur-oxidizing Gammaproteobacteria and sulfate-reducing Deltaproteobacteria. Leaf-attached phylotypes included relatives of polymer-degrading Bacteroidetes and phototrophic Alphaproteobacteria. Also, leaves and roots of three plant species hosted relatives of methylotrophic Betaproteobacteria belonging to the family Methylophilaceae. These results suggest that aquatic angiosperms host specialized communities of bacteria on their surfaces, including several broadly distributed and potentially mutualistic bacterial populations.
微生物与植物之间的共生关系在陆地生态系统中很常见且已得到充分研究,但对于水生环境中的此类关系却知之甚少。我们使用变性梯度凝胶电泳(DGGE)和PCR扩增的16S rRNA基因的DNA测序,比较了四种水生被子植物叶片和根部附着细菌的系统发育多样性。植物采自切萨皮克湾的三个植物床,地点分别为淡水环境(美洲苦草)、咸淡水环境(穿叶眼子菜和篦齿眼子菜)和海洋环境(大叶藻)。DGGE分析表明,对于形成冠层的植物篦齿眼子菜和穿叶眼子菜叶片的重复样本,其细菌群落非常相似;而对于形成草甸的植物大叶藻和美洲苦草的叶片重复样本以及所有物种的根部重复样本,其细菌群落相似度较低。相比之下,不同植物物种之间以及叶片和根部之间的细菌群落差异很大。DNA测序鉴定出154种细菌系统型,其中大多数仅限于单一植物物种。然而,在不止一种植物物种上发现了12种系统型,其中几种系统型在克隆文库中数量丰富,并且在DGGE条带模式中表现为最深的条带。附着在根部的系统型包括硫氧化γ-变形菌和硫酸盐还原δ-变形菌的亲缘种。附着在叶片上的系统型包括聚合物降解拟杆菌和光合α-变形菌的亲缘种。此外,三种植物物种的叶片和根部都有甲基营养β-变形菌科甲基ophilaceae的亲缘种。这些结果表明,水生被子植物在其表面拥有专门的细菌群落,包括几个广泛分布且可能互利的细菌种群。