Sumner Isaiah, Iyengar Srinivasan S
Department of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, USA.
J Chem Phys. 2008 Aug 7;129(5):054109. doi: 10.1063/1.2956496.
We discuss hybrid quantum-mechanics/molecular-mechanics (QM/MM) and quantum mechanics/quantum mechanics (QM/QM) generalizations to our recently developed quantum wavepacket ab initio molecular dynamics methodology for simultaneous dynamics of electrons and nuclei. The approach is a synergy between a quantum wavepacket dynamics, ab initio molecular dynamics, and the ONIOM scheme. We utilize this method to include nuclear quantum effects arising from a portion of the system along with a simultaneous description of the electronic structure. The generalizations provided here make the approach a potentially viable alternative for large systems. The quantum wavepacket dynamics is performed on a grid using a banded, sparse, and Toeplitz representation of the discrete free propagator, known as the "distributed approximating functional." Grid-based potential surfaces for wavepacket dynamics are constructed using an empirical valence bond generalization of ONIOM and further computational gains are achieved through the use of our recently introduced time-dependent deterministic sampling technique. The ab initio molecular dynamics is achieved using Born-Oppenheimer dynamics. All components of the methodology, namely, quantum dynamics and ONIOM molecular dynamics, are harnessed together using a time-dependent Hartree-like procedure. We benchmark the approach through the study of structural and vibrational properties of molecular, hydrogen bonded clusters inclusive of electronic, dynamical, temperature, and critical quantum nuclear effects. The vibrational properties are constructed through a velocity/flux correlation function formalism introduced by us in an earlier publication.
我们讨论了将混合量子力学/分子力学(QM/MM)和量子力学/量子力学(QM/QM)推广到我们最近开发的用于电子和原子核同时动力学的量子波包从头算分子动力学方法。该方法是量子波包动力学、从头算分子动力学和ONIOM方案之间的协同作用。我们利用这种方法来纳入系统一部分产生的核量子效应,同时描述电子结构。这里提供的推广使该方法成为大系统潜在可行的替代方案。量子波包动力学是在网格上使用离散自由传播子的带状、稀疏和托普利兹表示(称为“分布式近似泛函”)来执行的。用于波包动力学的基于网格的势能面是使用ONIOM的经验价键推广构建的,并且通过使用我们最近引入的时间相关确定性采样技术进一步实现了计算增益。从头算分子动力学是使用玻恩-奥本海默动力学实现的。该方法的所有组件,即量子动力学和ONIOM分子动力学,使用类似于含时哈特里的过程结合在一起。我们通过研究包含电子、动力学、温度和临界量子核效应的分子、氢键簇的结构和振动性质来对该方法进行基准测试。振动性质是通过我们在早期出版物中引入的速度/通量相关函数形式构建的。