Xue Yuanfei, Wang Jia-Ning, Hu Wenxin, Zheng Jun, Li Yongle, Pan Xiaoliang, Mo Yan, Shao Yihan, Wang Lu, Mei Ye
State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200062, China.
The Computer Center, School of Data Science & Engineering, East China Normal University, Shanghai 200062, China.
J Phys Chem A. 2021 Dec 23;125(50):10677-10685. doi: 10.1021/acs.jpca.1c07727. Epub 2021 Dec 12.
Path integral molecular dynamics (PIMD) is becoming a routinely applied method for incorporating the nuclear quantum effect in computer simulations. However, direct PIMD simulations at an level of theory are formidably expensive. Using the protonated 1,8-bis(dimethylamino)naphthalene molecule as an example, we show in this work that the computational expense for the intramolecular proton transfer between the two nitrogen atoms can be remarkably reduced by implementing the idea of reference-potential methods. The simulation time can be easily extended to a scale of nanoseconds while maintaining the accuracy on an level of theory for thermodynamic properties. In addition, postprocessing can be carried out in parallel on massive computer nodes. A 545-fold reduction in the total CPU time can be achieved in this way as compared to a direct PIMD simulation at the same level of theory.
路径积分分子动力学(PIMD)正成为计算机模拟中纳入核量子效应的常规应用方法。然而,在理论水平上进行直接的PIMD模拟成本极高。以质子化的1,8 - 双(二甲基氨基)萘分子为例,我们在这项工作中表明,通过实施参考势方法的理念,可以显著降低两个氮原子之间分子内质子转移的计算成本。在保持热力学性质理论水平精度的同时,模拟时间可以轻松扩展到纳秒尺度。此外,后处理可以在大量计算机节点上并行进行。与相同理论水平的直接PIMD模拟相比,这样可以实现总CPU时间减少545倍。