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A compromise required by gene sharing enables survival: Implications for evolution of new enzyme activities.
Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13497-502. doi: 10.1073/pnas.0804804105. Epub 2008 Aug 29.
2
A Synonymous Mutation Upstream of the Gene Encoding a Weak-Link Enzyme Causes an Ultrasensitive Response in Growth Rate.
J Bacteriol. 2016 Sep 22;198(20):2853-63. doi: 10.1128/JB.00262-16. Print 2016 Oct 15.
3
The gene-enzyme relationships of proline biosynthesis in Escherichia coli.
J Gen Microbiol. 1980 Jun;118(2):287-93. doi: 10.1099/00221287-118-2-287.
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Glutamate recognition and hydride transfer by Escherichia coli glutamyl-tRNA reductase.
FEBS J. 2007 Sep;274(17):4609-14. doi: 10.1111/j.1742-4658.2007.05989.x. Epub 2007 Aug 14.
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Expression of glutamyl-tRNA reductase in Escherichia coli.
Biochim Biophys Acta. 1996 Nov 11;1309(1-2):109-21. doi: 10.1016/s0167-4781(96)00117-0.
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Analysis of the Escherichia coli proBA locus by DNA and protein sequencing.
Nucleic Acids Res. 1984 Aug 10;12(15):6337-55. doi: 10.1093/nar/12.15.6337.

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Transcriptomic and proteomic ramifications of segmental amplification in .
Proc Natl Acad Sci U S A. 2025 May 20;122(20):e2422424122. doi: 10.1073/pnas.2422424122. Epub 2025 May 15.
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Frustration can Limit the Adaptation of Promiscuous Enzymes Through Gene Duplication and Specialisation.
J Mol Evol. 2024 Apr;92(2):104-120. doi: 10.1007/s00239-024-10161-4. Epub 2024 Mar 12.
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Cell Survival Enabled by Leakage of a Labile Metabolic Intermediate.
Mol Biol Evol. 2023 Mar 4;40(3). doi: 10.1093/molbev/msad032.
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How to Recruit a Promiscuous Enzyme to Serve a New Function.
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Substrate Dynamics Contribute to Enzymatic Specificity in Human and Bacterial Methionine Adenosyltransferases.
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The physical basis and practical consequences of biological promiscuity.
Phys Biol. 2020 Apr 3. doi: 10.1088/1478-3975/ab8697.
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Multifaceted Stoichiometry Control of Bacterial Operons Revealed by Deep Proteome Quantification.
Front Genet. 2019 May 24;10:473. doi: 10.3389/fgene.2019.00473. eCollection 2019.
10
Experimental Evolution of Innovation and Novelty.
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2
Identification of functional paralog shift mutations: conversion of Escherichia coli malate dehydrogenase to a lactate dehydrogenase.
Proc Natl Acad Sci U S A. 2007 Oct 30;104(44):17353-7. doi: 10.1073/pnas.0708265104. Epub 2007 Oct 18.
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Stress-induced mutagenesis in bacteria.
Crit Rev Biochem Mol Biol. 2007 Sep-Oct;42(5):373-97. doi: 10.1080/10409230701648494.
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Enzyme promiscuity: evolutionary and mechanistic aspects.
Curr Opin Chem Biol. 2006 Oct;10(5):498-508. doi: 10.1016/j.cbpa.2006.08.011. Epub 2006 Aug 30.
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Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection.
Mol Syst Biol. 2006;2:2006.0008. doi: 10.1038/msb4100050. Epub 2006 Feb 21.
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Design and evolution of new catalytic activity with an existing protein scaffold.
Science. 2006 Jan 27;311(5760):535-8. doi: 10.1126/science.1118953.
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ppGpp: a global regulator in Escherichia coli.
Trends Microbiol. 2005 May;13(5):236-42. doi: 10.1016/j.tim.2005.03.008.
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Structural and catalytic diversity within the amidohydrolase superfamily.
Biochemistry. 2005 May 3;44(17):6383-91. doi: 10.1021/bi047326v.

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