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获取土壤宏基因组以用于特定应用的策略。

Strategies for accessing soil metagenome for desired applications.

作者信息

Rajendhran J, Gunasekaran P

机构信息

Department of Genetics, Centre for Excellence in Genomic Sciences, School of Biological Sciences, Madurai Kamaraj University, Madurai-625 021, India.

出版信息

Biotechnol Adv. 2008 Nov-Dec;26(6):576-90. doi: 10.1016/j.biotechadv.2008.08.002. Epub 2008 Aug 22.

Abstract

Most of the microorganisms in nature are inaccessible as they are uncultivable in the laboratory. Metagenomic approaches promise the accessibility of the genetic resources and their potential applications. Genetic resources from terrestrial environments can be accessed by exploring the soil metagenome. Soil metagenomic analyses are usually initiated by the isolation of environmental DNAs. Several methods have been described for the direct isolation of environmental DNAs from soil and sediments. Application of metagenomics largely depends on the construction of genomic DNA libraries and subsequent high-throughput sequencing or library screening. Thus, obtaining large quantities of pure cloneable DNA from the environment is a prerequisite. This review discusses the recent developments related to efficient extraction and purification of soil metagenome highlighting the considerations for various metagenomic applications.

摘要

自然界中的大多数微生物难以获取,因为它们无法在实验室中培养。宏基因组学方法有望获取遗传资源及其潜在应用。通过探索土壤宏基因组可以获取来自陆地环境的遗传资源。土壤宏基因组分析通常始于环境DNA的分离。已经描述了几种从土壤和沉积物中直接分离环境DNA的方法。宏基因组学的应用很大程度上取决于基因组DNA文库的构建以及随后的高通量测序或文库筛选。因此,从环境中获得大量纯的可克隆DNA是一个先决条件。本综述讨论了与土壤宏基因组高效提取和纯化相关的最新进展,强调了各种宏基因组学应用的注意事项。

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