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机械敏感通道:基于连续介质模拟的见解

Mechanosensitive channels: insights from continuum-based simulations.

作者信息

Tang Yuye, Yoo Jejoong, Yethiraj Arun, Cui Qiang, Chen Xi

机构信息

Department of Civil Engineering and Engineering Mechanics, Nanomechanics Research Center, Columbia University, New York, NY 10027, USA.

出版信息

Cell Biochem Biophys. 2008;52(1):1-18. doi: 10.1007/s12013-008-9024-5. Epub 2008 Sep 12.

Abstract

Mechanotransduction plays an important role in regulating cell functions and it is an active topic of research in biophysics. Despite recent advances in experimental and numerical techniques, the intrinsic multiscale nature imposes tremendous challenges for revealing the working mechanisms of mechanosensitive channels. Recently, a continuum-mechanics-based hierarchical modeling and simulation framework has been established and applied to study the mechanical responses and gating behaviors of a prototypical mechanosensitive channel, the mechanosensitive channel of large conductance (MscL) in bacteria Escherichia coli (E. coli), from which several putative gating mechanisms have been tested and new insights are deduced. This article reviews these latest findings using the continuum mechanics framework and suggests possible improvements for future simulation studies. This computationally efficient and versatile continuum-mechanics-based protocol is poised to make contributions to the study of a variety of mechanobiology problems.

摘要

机械转导在调节细胞功能中起着重要作用,是生物物理学中一个活跃的研究课题。尽管实验和数值技术最近取得了进展,但内在的多尺度性质给揭示机械敏感通道的工作机制带来了巨大挑战。最近,基于连续介质力学的层次建模和模拟框架已经建立,并应用于研究典型的机械敏感通道——大肠杆菌(E. coli)中的大电导机械敏感通道(MscL)的力学响应和门控行为,从中测试了几种假定的门控机制并得出了新的见解。本文使用连续介质力学框架回顾了这些最新发现,并为未来的模拟研究提出了可能的改进建议。这种基于连续介质力学的计算高效且通用的协议有望为各种力学生物学问题的研究做出贡献。

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本文引用的文献

1
A Nonlinear Elasticity Model of Macromolecular Conformational Change Induced by Electrostatic Forces.
J Math Anal Appl. 2008 Apr 1;340(1):135-164. doi: 10.1016/j.jmaa.2007.07.084.
2
Effects of the addition of electrolyte on liquid infiltration in a hydrophobic nanoporous silica gel.
Langmuir. 2008 Jul 15;24(14):7044-7. doi: 10.1021/la800446z. Epub 2008 Jun 20.
3
Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework.
Biophys J. 2008 Jul;95(2):563-80. doi: 10.1529/biophysj.107.128488. Epub 2008 Apr 4.
4
Gating mechanisms of mechanosensitive channels of large conductance, II: systematic study of conformational transitions.
Biophys J. 2008 Jul;95(2):581-96. doi: 10.1529/biophysj.107.128496. Epub 2008 Apr 4.
5
Confirming the revised C-terminal domain of the MscL crystal structure.
Biophys J. 2008 Jun;94(12):4662-7. doi: 10.1529/biophysj.107.127365. Epub 2008 Mar 7.
6
Gating of the mechanosensitive channel protein MscL: the interplay of membrane and protein.
Biophys J. 2008 May 1;94(9):3497-511. doi: 10.1529/biophysj.107.109850. Epub 2008 Jan 22.
7
Mechanosensitive membrane channels in action.
Biophys J. 2008 Apr 15;94(8):2994-3002. doi: 10.1529/biophysj.107.119966. Epub 2008 Jan 11.
8
Straightening and sequential buckling of the pore-lining helices define the gating cycle of MscS.
Nat Struct Mol Biol. 2007 Dec;14(12):1141-9. doi: 10.1038/nsmb1341. Epub 2007 Nov 25.
10

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