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蠕形住肠线虫(线虫纲:尖尾线虫目)的线粒体基因组序列——一种独特的基因排列及色矛线虫的系统发育信息

The mitochondrial genome sequence of Enterobius vermicularis (Nematoda: Oxyurida)--an idiosyncratic gene order and phylogenetic information for chromadorean nematodes.

作者信息

Kang Seokha, Sultana Tahera, Eom Keeseon S, Park Yung Chul, Soonthornpong Nathan, Nadler Steven A, Park Joong-Ki

机构信息

Department of Parasitology, College of Medicine, Chungbuk National University, Cheongju 361-763, Republic of Korea.

出版信息

Gene. 2009 Jan 15;429(1-2):87-97. doi: 10.1016/j.gene.2008.09.011. Epub 2008 Sep 20.

Abstract

The complete mitochondrial genome sequence was determined for the human pinworm Enterobius vermicularis (Oxyurida: Nematoda) and used to infer its phylogenetic relationship to other major groups of chromadorean nematodes. The E. vermicularis genome is a 14,010-bp circular DNA molecule that encodes 36 genes (12 proteins, 22 tRNAs, and 2 rRNAs). This mtDNA genome lacks atp8, as reported for almost all other nematode species investigated. Phylogenetic analyses (maximum parsimony, maximum likelihood, neighbor joining, and Bayesian inference) of nucleotide sequences for the 12 protein-coding genes of 25 nematode species placed E. vermicularis, a representative of the order Oxyurida, as sister to the main Ascaridida+Rhabditida group. Tree topology comparisons using statistical tests rejected an alternative hypothesis favoring a closer relationship among Ascaridida, Spirurida, and Oxyurida, which has been supported from most studies based on nuclear ribosomal DNA sequences. Unlike the relatively conserved gene arrangement found for most chromadorean taxa, E. vermicularis mtDNA gene order is very unique, not sharing similarity to any other nematode species reported to date. This lack of gene order similarity may represent idiosyncratic gene rearrangements unique to this specific lineage of the oxyurids. To more fully understand the extent of gene rearrangement and its evolutionary significance within the nematode phylogenetic framework, additional mitochondrial genomes representing a greater evolutionary diversity of species must be characterized.

摘要

测定了人蛲虫(蠕形住肠线虫,尖尾科:线虫纲)的完整线粒体基因组序列,并用于推断其与其他主要色矛线虫类群的系统发育关系。蛲虫基因组是一个14,010碱基对的环状DNA分子,编码36个基因(12种蛋白质、22种tRNA和2种rRNA)。如几乎所有其他已研究的线虫物种所报道的那样,该线粒体DNA基因组缺少atp8基因。对25种线虫物种的12个蛋白质编码基因的核苷酸序列进行系统发育分析(最大简约法、最大似然法、邻接法和贝叶斯推断),结果将尖尾科的代表物种蛲虫置于蛔目+小杆目主要类群的姐妹位置。使用统计检验进行的树形拓扑比较拒绝了另一种假说,即蛔目、旋尾目和尖尾目之间关系更近,而基于核糖体DNA序列的大多数研究都支持这一假说。与大多数色矛线虫类群相对保守的基因排列不同之处在于,蛲虫线粒体DNA的基因顺序非常独特,与迄今报道的任何其他线虫物种都没有相似性。这种基因顺序缺乏相似性可能代表了尖尾科这一特定谱系特有的特殊基因重排。为了更全面地了解线虫系统发育框架内基因重排的程度及其进化意义,必须对代表更多物种进化多样性的其他线粒体基因组进行特征描述。

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