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一个将活化能与键角和距离相关联的新数学方程:理解三甲基锁定系统内酯化中加速作用的关键。

A new mathematical equation relating activation energy to bond angle and distance: A key for understanding the role of acceleration in lactonization of the trimethyl lock system.

作者信息

Karaman Rafik

机构信息

College of Pharmacy, Al-Quds University, Abu-Dies, Jerusalem, Palestinian Territory.

出版信息

Bioorg Chem. 2009 Feb;37(1):11-25. doi: 10.1016/j.bioorg.2008.08.006. Epub 2008 Oct 25.

Abstract

AM1 semi-empirical molecular orbital and ab initio HF at the 6-31G level calculations for the lactonization processes of 12 different hydroxy acids (1a-1l) which differ in their structural features have been conducted. The calculations obtained reveal the following: (1) The rate-limiting step in the lactonization process is formation of a tetrahedral intermediate and not its collapse as was previously reported. (2) The rate-limiting step in both the acid-catalyzed and uncatalyzed lactonization is composed of two successive steps: approach of the hydroxyl toward the carbonyl carbon until it reaches a distance of 1.4 -1.5A, followed by proton transfer from the ether-type oxygen to one of the hydroxyls in the tetrahedral intermediate. Calculations of the activation energies for formation of the tetrahedral intermediate in the 12 hydroxy acids studied indicate: (1) A linear relationship exists between the change in enthalpic energy (E) and the ratio of the attack angle (nucleophilic-oxygen/carbonyl-carbon/alphalambdapietaalpha-carbon) to the distance (nucleophilic-oxygen/carbonyl-carbon) termed alpha/r; (2) The slope (S) of E vs. alpha/r plots depend on the nature of the hydroxy acids. Furthermore, plots of S values against the experimental rate values (log k(exp)) show a linear correlation with a high correlation coefficient. The combined results suggest that hydroxy acids with low S values have high k(exp) values due to enthalpic proximity effects.

摘要

已对12种结构特征不同的羟基酸(1a - 1l)的内酯化过程进行了AM1半经验分子轨道和6 - 31G水平的从头算HF计算。所得计算结果表明:(1)内酯化过程中的限速步骤是四面体中间体的形成,而非如先前报道的那样是其分解。(2)酸催化和未催化内酯化的限速步骤均由两个连续步骤组成:羟基向羰基碳靠近,直至距离达到1.4 - 1.5埃,随后质子从醚型氧转移至四面体中间体中的一个羟基上。对所研究的12种羟基酸中四面体中间体形成的活化能计算表明:(1)焓能变化(E)与攻击角(亲核氧/羰基碳/α-λ-π-α-碳)与距离(亲核氧/羰基碳)之比(称为α/r)之间存在线性关系;(2)E对α/r图的斜率(S)取决于羟基酸的性质。此外,S值对实验速率值(log k(exp))的图显示出具有高相关系数的线性相关性。综合结果表明,由于焓接近效应,具有低S值的羟基酸具有高k(exp)值。

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