Mohanty Sandipan, Hansmann Ulrich H E
John von Neumann-Institut für Computing, Forschungszentrum Jülich, D-52425 Jülich, Germany.
J Phys Chem B. 2008 Nov 27;112(47):15134-9. doi: 10.1021/jp804661t.
We report results from all-atom simulations of a 49-residue C-terminal fragment of TOP7 in implicit solvent. Using parallel tempering simulations with high statistics, we probe the thermodynamic properties of the protein over a large range of temperatures and evaluate its free energy landscape at room temperature. Our results confirm that the protein folds by a caching mechanism that relies on a chameleon segment. This mechanism differs from the one seen in high-temperature unfolding simulations. Finally, we discuss a possible mechanism for dimerization of the protein.
我们报告了在隐式溶剂中对TOP7的49个残基C端片段进行全原子模拟的结果。通过具有高统计量的并行回火模拟,我们在大范围温度下探究了该蛋白质的热力学性质,并评估了其在室温下的自由能景观。我们的结果证实,该蛋白质通过一种依赖于变色龙片段的缓存机制折叠。这种机制不同于在高温展开模拟中看到的机制。最后,我们讨论了该蛋白质二聚化的一种可能机制。