Dastager Syed G, Lee Jae-Chan, Ju Yoon-Jung, Park Dong-Jin, Kim Chang-Jin
Functional Metabolomics Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon 305-806, Republic of Korea.
Int J Syst Evol Microbiol. 2008 Nov;58(Pt 11):2536-40. doi: 10.1099/ijs.0.2008/001222-0.
A Gram-positive, short, rod-shaped, cream-coloured actinobacterium, designated MSL-04(T), was isolated from a soil sample collected from an agricultural field on Bigeum Island (Republic of Korea) and was subjected to polyphasic characterization to unravel its taxonomic position. The optimum growth temperature and pH were 28-30 degrees C and pH 7.2-7.4. Chemotaxonomic characteristics such as B2beta-type peptidoglycan with glycolyl residues, MK-11 and MK-12 as the major menaquinones and a fatty acid profile containing iso- and anteiso-branched fatty acids placed this organism within the genus Microbacterium. Phylogenetic analysis based on 16S rRNA gene sequences confirmed the position of strain MSL-04(T) in the genus Microbacterium and showed that it belonged to the same clade as Microbacterium ulmi but was distinct from its nearest neighbours. The 16S rRNA gene sequence of strain MSL-04(T) showed the highest levels of similarity with respect to Microbacterium ulmi LMG 20991(T) (97.5 % similarity) and Microbacterium arborescens IFO 3750(T) (97 %). The G+C content of the DNA was 71.0 mol%. The DNA-DNA relatedness between MSL-04(T) and its closest neighbours (<70 %) showed that the strain represents a distinct genomic species. On the basis of the phenotypic and genotypic results, strain MSL-04(T) represents a novel species in the genus Microbacterium, for which the name Microbacterium kribbense sp. nov. is proposed. The type strain is MSL-04(T) (=KCTC 19269(T) =DSM 19265(T)).
从韩国巨文岛一块农田采集的土壤样本中分离出一株革兰氏阳性、短杆状、奶油色的放线菌,命名为MSL-04(T),并对其进行了多相分类鉴定以确定其分类地位。最适生长温度和pH分别为28-30℃和pH 7.2-7.4。化学分类特征,如含乙醇酸残基的B2β型肽聚糖、以MK-11和MK-12作为主要甲基萘醌以及含有异分支和anteiso分支脂肪酸的脂肪酸谱,将该菌株归为微杆菌属。基于16S rRNA基因序列的系统发育分析证实了菌株MSL-04(T)在微杆菌属中的位置,并表明它与榆树微杆菌属于同一进化枝,但与其最接近的邻居不同。菌株MSL-04(T)的16S rRNA基因序列与榆树微杆菌LMG 20991(T)(相似性97.5%)和树木微杆菌IFO 3750(T)(相似性97%)显示出最高水平的相似性。DNA的G+C含量为71.0 mol%。MSL-04(T)与其最接近邻居之间的DNA-DNA相关性(<70%)表明该菌株代表一个独特的基因组物种。基于表型和基因型结果,菌株MSL-04(T)代表微杆菌属中的一个新物种,为此提出名为克氏微杆菌(Microbacterium kribbense sp. nov.)。模式菌株为MSL-04(T)(=KCTC 19269(T)=DSM 19265(T))。