Yantsevich A V, Gilep A A, Usanov S A
Institute of Bioorganic Chemistry, National Academy of Sciences of Belarus, Minsk, 220141, Belarus.
Biochemistry (Mosc). 2008 Oct;73(10):1096-107. doi: 10.1134/s0006297908100052.
In the present work we summarize results on construction of expression plasmid, heterologous expression in Escherichia coli, isolation and purification, as well as physicochemical characterization of chimeric protein consisting of hydrophilic domain of cytochrome b(5) and truncated from the N-terminal sequence (Delta(23)) form of NADH-cytochrome b(5) reductase. The kinetics and mechanism of electron transfer between NADH-cytochrome b(5) reductase and cytochrome b(5) in the frames of fusion protein consisting of cytochrome b(5) (94 amino acids) and truncated form of NADH-cytochrome b(5) reductase (277 amino acids) have been studied. It is shown that electron transfer takes place between redox partners belonging to two different molecules of the chimeric protein. Using computer modeling, we built the model of the tertiary structure of the fusion protein, which is in agreement with experimental data. By using Marcus theory of electron transfer in polar media, we demonstrate the inability of the hypothesis of electrostatic repulsions to explain the increase of electron transfer rate on increase of ion concentration in media due to elimination of the repulsion of similar charges. The real reason for the increase of the first order rate constant in some oxidation-reduction reactions between proteins, as shown in the present work, is a decrease of the media reorganization energy resulting in decrease of activation energy for oxidation-reduction reactions.
在本研究中,我们总结了关于表达质粒构建、在大肠杆菌中的异源表达、分离与纯化以及由细胞色素b(5)的亲水结构域和从N端序列截短(Δ(23))的NADH-细胞色素b(5)还原酶形式组成的嵌合蛋白的物理化学特性的研究结果。研究了在由细胞色素b(5)(94个氨基酸)和截短形式的NADH-细胞色素b(5)还原酶(277个氨基酸)组成的融合蛋白框架内,NADH-细胞色素b(5)还原酶与细胞色素b(5)之间电子转移的动力学和机制。结果表明,电子转移发生在属于嵌合蛋白两个不同分子的氧化还原伙伴之间。通过计算机建模,我们构建了融合蛋白三级结构的模型,该模型与实验数据一致。利用Marcus在极性介质中的电子转移理论,我们证明了静电排斥假说无法解释由于消除相似电荷的排斥作用而导致介质中离子浓度增加时电子转移速率的增加。如本研究所示,蛋白质之间某些氧化还原反应中一级速率常数增加的真正原因是介质重组能的降低,从而导致氧化还原反应活化能的降低。