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通过使用半合成方法揭示转录/翻译反馈回路在基于蓝藻生物钟蛋白KaiC的昼夜节律系统中的作用的尝试。

An attempt to reveal a role of a transcription/translation feedback loop in the cyanobacterial KaiC protein-based circadian system by using a semi-synthetic method.

作者信息

Tozaki Hirokazu, Kobe Taiichiro, Aihara Kazuyuki, Iwasaki Hideo

机构信息

ERATO Aihara Complexity Modelling Project, JST, 3-23-5 Uehara, Shibuya, Tokyo 151-0064, Japan.

出版信息

Int J Bioinform Res Appl. 2008;4(4):435-44. doi: 10.1504/IJBRA.2008.021178.

Abstract

The use of synthetic biology to design artificial gene circuits is an important approach for understanding the principles underlying the complicated dynamic behaviours of biomolecular networks, such as genetic switching and biological rhythms. The synthetic approach is also useful in systems biology in that it can be used to create artificial bypasses for processes related to cellular phenomena of interest for their easier analysis. To validate the role of transcription feedback in the cyanobacterial circadian system, we propose an experimental design for a 'semi-synthetic' approach that involves transplantation of the kaiABC genes into Escherichia coli and the construction of chimeric transcriptional outputs. The design principle and preliminary results are discussed.

摘要

利用合成生物学设计人工基因回路是理解生物分子网络复杂动态行为(如基因开关和生物节律)背后原理的重要方法。合成方法在系统生物学中也很有用,因为它可用于为与感兴趣的细胞现象相关的过程创建人工旁路,以便更轻松地进行分析。为了验证转录反馈在蓝藻生物钟系统中的作用,我们提出了一种“半合成”方法的实验设计,该方法涉及将kaiABC基因移植到大肠杆菌中并构建嵌合转录输出。讨论了设计原理和初步结果。

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