Peeters Kasper, Taormina Anne
Institute for Theoretical Physics, Utrecht University, P.O. Box 80.195, 3508 TD Utrecht, The Netherlands.
J Theor Biol. 2009 Feb 21;256(4):607-24. doi: 10.1016/j.jtbi.2008.10.019. Epub 2008 Oct 29.
We explore the use of a top-down approach to analyse the dynamics of icosahedral virus capsids and complement the information obtained from bottom-up studies of viral vibrations available in the literature. A normal mode analysis based on protein association energies is used to study the frequency spectrum, in which we reveal a universal plateau of low-frequency modes shared by a large class of Caspar-Klug capsids. These modes break icosahedral symmetry and are potentially relevant to the genome release mechanism. We comment on the role of viral tiling theory in such dynamical considerations.
我们探索采用自上而下的方法来分析二十面体病毒衣壳的动力学,并补充从文献中关于病毒振动的自下而上研究中获得的信息。基于蛋白质缔合能的正常模式分析用于研究频谱,在该频谱中我们揭示了一大类卡斯帕 - 克卢格衣壳所共有的低频模式的通用平台。这些模式打破了二十面体对称性,并且可能与基因组释放机制相关。我们评论了病毒平铺理论在这种动力学考虑中的作用。