Dopitová Radka, Mazura Pavel, Janda Lubomír, Chaloupková Radka, Jerábek Petr, Damborský Jirí, Filipi Tomás, Kiran Nagavalli S, Brzobohatý Bretislav
Institute of Biophysics AS CR, v.v.i., Brno, Czech Republic.
FEBS J. 2008 Dec;275(24):6123-35. doi: 10.1111/j.1742-4658.2008.06735.x. Epub 2008 Oct 30.
Beta-glucosidases such as Zm-p60.1 (Zea mays) and Bgl4:1 (Brassica napus) have implicated roles in regulating plant development by releasing biologically active cytokinins from O-glucosides. A key determinant of substrate specificity in Zm-p60.1 is the F193-F200-W373-F461 cluster. However, despite sharing the same substrates, amino acids in the active sites of Zm-p60.1 and Bgl4:1 differ dramatically. In members of the Brassicaceae we found a group of beta-glucosidases sharing both high similarity to Bgl4:1 and a consensus motif A-K-K-L corresponding to the F193-F200-W373-F461 cluster. To study the mechanism of substrate specificity further, we generated and analyzed four single (F193A, F200K, W373K and F461L) and one quadruple (F193A-F200K-W373K-F461L) mutants of Zm-p60.1. The F193A mutant showed a specific increase in affinity for a small polar aglycone, and a deep decrease in k(cat) compared with the wild-type. Formation of a cavity with decreased hydrophobicity, and significant consequent alterations in ratios of reactive and non-reactive complexes, revealed by computer modeling, may explain the observed changes in kinetic parameters of the F193 mutant. The large decrease in k(cat) for the W373K mutant was unexpected, but the findings are consistent with the F193-aglycone-W373 interaction playing a dual role in the enzyme's catalytic action; influencing both substrate specificity, and the catalytic rate by fixing the glucosidic bond in a favorable orientation for attack by the catalytic pair. Investigation of the combined effects of all of the mutations in the quadruple mutant of Zm-p60.1 was precluded by extensive alterations in its structure and almost complete abolition of its enzymatic activity.
诸如Zm-p60.1(玉米)和Bgl4:1(甘蓝型油菜)等β-葡萄糖苷酶通过从O-葡萄糖苷释放生物活性细胞分裂素,在调节植物发育中发挥作用。Zm-p60.1底物特异性的一个关键决定因素是F193-F200-W373-F键461簇。然而,尽管Zm-p60.1和Bgl4:1的活性位点氨基酸共享相同的底物,但差异很大。在十字花科成员中,我们发现一组β-葡萄糖苷酶与Bgl4:1高度相似,并且具有与F193-F200-W373-F461簇相对应的共有基序A-K-K-L。为了进一步研究底物特异性机制,我们构建并分析了Zm-p60.1的四个单突变体(F193A、F200K、W373K和F461L)和一个四突变体(F193A-F200K-W373K-F461L)。与野生型相比,F193A突变体对小极性苷元的亲和力特异性增加,而k(cat)大幅下降。计算机模拟显示,形成了一个疏水性降低的空腔,以及反应性和非反应性复合物比例的显著变化,这可能解释了F193突变体动力学参数的观察变化。W373K突变体的k(cat)大幅下降出乎意料,但研究结果与F193-苷元-W373相互作用在酶的催化作用中发挥双重作用一致;既影响底物特异性,又通过将糖苷键固定在有利于催化对攻击的方向来影响催化速率。Zm-p60.1四突变体中所有突变的综合效应研究因结构广泛改变和酶活性几乎完全丧失而无法进行。