• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

Protein energy landscape roughness.

作者信息

Kapon Ruti, Nevo Reinat, Reich Ziv

机构信息

Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, Israel.

出版信息

Biochem Soc Trans. 2008 Dec;36(Pt 6):1404-8. doi: 10.1042/BST0361404.

DOI:10.1042/BST0361404
PMID:19021564
Abstract

The 'new view' of proteins sees protein reactions as parallel processes occurring along funnelled energy landscapes. These landscapes are generally not smooth, but are superimposed by hills and valleys of different heights and widths leading to roughness on the energy surface. In the present paper, we describe the origins of protein energy landscape roughness, measurements of its scale and its implications.

摘要

相似文献

1
Protein energy landscape roughness.
Biochem Soc Trans. 2008 Dec;36(Pt 6):1404-8. doi: 10.1042/BST0361404.
2
From valleys to ridges: exploring the dynamic energy landscape of single membrane proteins.从山谷到山脊:探索单膜蛋白的动态能量景观
Chemphyschem. 2008 May 16;9(7):954-66. doi: 10.1002/cphc.200700662.
3
Deconstructing the native state: energy landscapes, function, and dynamics of globular proteins.解构天然状态:球状蛋白质的能量景观、功能与动力学
J Phys Chem B. 2009 Jul 2;113(26):8800-12. doi: 10.1021/jp810659u.
4
Toward an accurate determination of free energy landscapes in solution states of proteins.迈向准确测定蛋白质溶液状态下的自由能景观。
J Am Chem Soc. 2009 Mar 25;131(11):3810-1. doi: 10.1021/ja8087295.
5
Dynamic landscapes, stability and ecological modeling.动态景观、稳定性与生态建模。
Acta Biotheor. 2006;54(1):43-53. doi: 10.1007/s10441-006-6802-6.
6
Protein-ligand binding free energy calculation by the Smooth Reaction Path Generation (SRPG) Method.通过平滑反应路径生成(SRPG)方法进行蛋白质-配体结合自由能计算。
J Chem Inf Model. 2009 Aug;49(8):1944-51. doi: 10.1021/ci9002156.
7
[Biogeocenosis thermodynamics based on remote sensing].
Zh Obshch Biol. 2009 Mar-Apr;70(2):121-42.
8
Computer simulations and theory of protein translocation.蛋白质转运的计算机模拟与理论
Acc Chem Res. 2009 Feb 17;42(2):281-9. doi: 10.1021/ar800128x.
9
Free-energy landscapes of proteins in the presence and absence of force.存在和不存在外力时蛋白质的自由能景观。
J Phys Chem B. 2008 Dec 25;112(51):16902-7. doi: 10.1021/jp807316e.
10
Dissociation aided and side chain sampling enhanced Hamiltonian replica exchange.解离辅助和侧链采样增强哈密顿量副本交换
J Chem Phys. 2009 Apr 28;130(16):164107. doi: 10.1063/1.3120483.

引用本文的文献

1
The alterations of repetitive transcranial magnetic stimulation on the energy landscape of resting-state networks differ across the human cortex.重复经颅磁刺激对静息态网络能量景观的改变在人类大脑皮层中是不同的。
Hum Brain Mapp. 2024 Oct 15;45(15):e70029. doi: 10.1002/hbm.70029.
2
Distinction and Quantification of Noncovalent Dispersive and Hydrophobic Effects.非共价分散作用和疏水作用的区分与量化
Molecules. 2024 Apr 2;29(7):1591. doi: 10.3390/molecules29071591.
3
Fuzzy Drug Targets: Disordered Proteins in the Drug-Discovery Realm.
模糊的药物靶点:药物研发领域中的无序蛋白质
ACS Omega. 2023 Mar 8;8(11):9729-9747. doi: 10.1021/acsomega.2c07708. eCollection 2023 Mar 21.
4
Conformational Dynamics in Extended RGD-Containing Peptides.富含扩展型 RGD 肽的构象动力学。
Biomacromolecules. 2020 Jul 13;21(7):2786-2794. doi: 10.1021/acs.biomac.0c00506. Epub 2020 Jun 16.
5
Quantifying residue-specific conformational dynamics of a highly reactive 29-mer peptide.定量研究高反应性 29 肽的残基特异性构象动力学。
Sci Rep. 2020 Feb 13;10(1):2597. doi: 10.1038/s41598-020-59047-7.
6
Stabilization of a protein conferred by an increase in folded state entropy.增加折叠态熵赋予蛋白质稳定性。
Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10628-33. doi: 10.1073/pnas.1302284110. Epub 2013 Jun 10.
7
Connecting the kinetics and energy landscape of tRNA translocation on the ribosome.连接核糖体上 tRNA 易位的动力学和能量景观。
PLoS Comput Biol. 2013;9(3):e1003003. doi: 10.1371/journal.pcbi.1003003. Epub 2013 Mar 21.
8
Intrinsically disordered proteins in a physics-based world.基于物理学视角下的内在无序蛋白质
Int J Mol Sci. 2010;11(12):5292-309. doi: 10.3390/ijms11125292. Epub 2010 Dec 21.