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磺胺苯甲酰胺中氢键相互作用的系统研究:N-14、O-17和H-2核磁共振参数的密度泛函理论计算

A systematic study on hydrogen bond interactions in sulfabenzamide: DFT calculations of the N-14, O-17, and H-2 NQR parameters.

作者信息

Nozad Ahmad G, Najafi Hamidreza, Meftah Sakineh, Aghazadeh Mustafa

机构信息

Material Research School, NSTRI, P.O. Box 14395-836, Tehran, Iran.

出版信息

Biophys Chem. 2009 Feb;139(2-3):116-22. doi: 10.1016/j.bpc.2008.10.010. Epub 2008 Nov 10.

Abstract

A systematic computational study was carried out to characterize the hydrogen bond, HB, interactions of sulfabenzamide crystal structure by DFT calculations of electric field gradient, EFG, tensors at the sites of 14N, 17O, and 2H nuclei. The computations were performed with the B3LYP and B3PW91 DFT methods and 6-311+G and 6-311++G* standard basis sets using the Gaussian 98 package. To perform the calculations, a hydrogen-bonded heptameric cluster of sulfabenzamide was created by X-ray coordinates where the hydrogen atom positions were optimized and the EFG tensors were calculated for the target molecule. Additional optimization and EFG calculations were also performed for crystalline monomer and an isolated gas-phase sulfabenzamide. The calculated EFG tensors were converted to the experimentally measurable nuclear quadrupole resonance, NQR, parameters: quadrupole coupling constant, C(Q), and asymmetry parameter, eta(Q). The results reveal that the geometrical and NQR parameters of the optimized isolated gas-phase and crystalline phase are different. In addition, the difference between the calculated NQR parameters of the monomer and the target molecule shows how much H-bonding interactions affect the EFG tensors of each nucleus. The evaluated NQR parameters reveal that due to the contribution of the target molecule to N-H...O and C-H...O hydrogen bond interactions, the EFG tensors at the sites of N1, O3 and H1 undergo significant changes from monomer to the target molecule in cluster. These features reveal the major role of N-H...O type intermolecular HBs in cluster model of sulfabenzamide which the presence of these interactions can lead to polymorphism directly related to the drug activity and related properties.

摘要

通过对14N、17O和2H原子核位置处的电场梯度(EFG)张量进行密度泛函理论(DFT)计算,开展了一项系统的计算研究,以表征磺胺苯甲酰胺晶体结构中的氢键(HB)相互作用。使用高斯98软件包,采用B3LYP和B3PW91 DFT方法以及6 - 311 + G和6 - 311++G*标准基组进行计算。为了进行计算,通过X射线坐标创建了一个磺胺苯甲酰胺的氢键七聚体簇,其中氢原子位置经过优化,并计算了目标分子的EFG张量。还对结晶单体和孤立气相磺胺苯甲酰胺进行了额外的优化和EFG计算。将计算得到的EFG张量转换为实验可测量的核四极共振(NQR)参数:四极耦合常数C(Q)和不对称参数eta(Q)。结果表明,优化后的孤立气相和结晶相的几何参数和NQR参数不同。此外,单体与目标分子计算得到的NQR参数之间的差异表明了氢键相互作用对每个原子核EFG张量的影响程度。评估得到的NQR参数表明,由于目标分子对N - H...O和C - H...O氢键相互作用的贡献,从单体到簇中的目标分子,N1、O3和H1位置处的EFG张量发生了显著变化。这些特征揭示了N - H...O型分子间氢键在磺胺苯甲酰胺簇模型中的主要作用,这些相互作用的存在可直接导致与药物活性及相关性质相关的多晶型现象。

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