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[早期二氧化硅暴露大鼠肺组织差异基因表达谱研究]

[The study on differential gene expression profiling in pulmonary tissue of rats exposed to silica early].

作者信息

Chen Lei, Wang Shi-Xin, Liu Ping, Wei Mao-Ti, Luan Da-Wei, He Rui-Bo, Tu Zhi-Guang

机构信息

Key Laboratory of Laboratory Medical Diagnostics, Ministry of Education, Chongqing Medical University, Chongqing 400016, China.

出版信息

Zhonghua Yu Fang Yi Xue Za Zhi. 2008 Jul;42(7):515-21.

Abstract

OBJECTIVE

To study the differential gene expression profiling of rats exposed to silica using the normal rats as control.

METHODS

Animal models were established using intratracheal injection of the lung and 22 107 genes were screened in the differential expression profiling of silicosis by using oligonucleotide bead array. Differential expression profiling data were analyzed by using DAVID bioinformation software.

RESULTS

Totally 1567 differentially expressed genes were identified in lungs of silica exposed rats including 765 up-regulated genes and 802 down-regulated genes as compared to the normal controls. Among 406 annotated genes in KEGG pathways, 204 genes and 11 pathways were up-regulated as well as 202 genes and 3 pathways were down-regulated in silica exposed rats.

CONCLUSION

All 1567 genes are involved in the formation of silicosis. The differential gene expression profile of silicosis describes the general changes in the gene expressions in silicosis at transcriptional level. Further analysis of the identified genes might help reveal the molecular mechanism of pulmonary fibrosis induced by silica.

摘要

目的

以正常大鼠为对照,研究二氧化硅暴露大鼠的差异基因表达谱。

方法

通过气管内注入肺部建立动物模型,并使用寡核苷酸微珠阵列在矽肺差异表达谱中筛选22107个基因。使用DAVID生物信息软件分析差异表达谱数据。

结果

与正常对照组相比,在二氧化硅暴露大鼠的肺中总共鉴定出1567个差异表达基因,其中765个基因上调,802个基因下调。在KEGG通路中的406个注释基因中,二氧化硅暴露大鼠中有204个基因和11条通路上调,以及202个基因和3条通路下调。

结论

所有1567个基因均参与矽肺的形成。矽肺的差异基因表达谱描述了矽肺在转录水平上基因表达的总体变化。对鉴定出的基因进行进一步分析可能有助于揭示二氧化硅诱导肺纤维化的分子机制。

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