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蛋白质的折叠动力学与冷变性

Folding kinetics of proteins and cold denaturation.

作者信息

Collet Olivier

机构信息

LPM, Nancy-Universite, CNRS, Boulevard des Aiguillettes BP 239, F-54506 Vandoeuvre-les-Nancy, France.

出版信息

J Chem Phys. 2008 Oct 21;129(15):155101. doi: 10.1063/1.2992556.

Abstract

Folding kinetics of a lattice model of protein is studied. It uses the random energy model for the intrachain couplings and a temperature dependent free energy of solvation derived from a realistic hydration model of apolar solutes. The folding times are computed using Monte Carlo simulations in the region of the phase diagram where the chain occurs in the native structure. These folding times are roughly equals for the temperatures of cold and warm denaturations for a large range of solvent quality. Between these temperatures, the folding times reach maxima and thus, at low temperatures, the kinetics of the chain always speeds up as the temperature is decreased. The study of the conformational space as function of the temperature permits to elucidate this phenomenon. At low temperature, it shows that the activation barriers of the system decrease faster than the temperature as the temperature is decreased. At high temperature, the rate of the barriers over the temperature decreases as the temperature is increased because the height of the barrier is almost constant.

摘要

研究了蛋白质晶格模型的折叠动力学。它使用随机能量模型来描述链内耦合,并从非极性溶质的实际水合模型推导出与温度相关的溶剂化自由能。在相图中链以天然结构存在的区域,使用蒙特卡罗模拟计算折叠时间。对于大范围的溶剂质量,冷变性和热变性温度下的这些折叠时间大致相等。在这两个温度之间,折叠时间达到最大值,因此在低温下,随着温度降低,链的动力学总是加快。研究构象空间随温度的变化有助于阐明这一现象。在低温下,结果表明随着温度降低,系统的活化能垒比温度下降得更快。在高温下,随着温度升高,能垒随温度的变化率下降,因为能垒高度几乎不变。

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