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电离对肽模型构象偏好的影响。N-甲酰甘氨酸酰胺和N-甲酰丙氨酸酰胺自由基阳离子的拉马钱德兰表面。

Influence of ionization on the conformational preferences of peptide models. Ramachandran surfaces of N-formyl-glycine amide and N-formyl-alanine amide radical cations.

作者信息

Gil Adrià, Sodupe Mariona, Bertran Juan

机构信息

Departament de Química, Universitat Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain.

出版信息

J Comput Chem. 2009 Sep;30(12):1771-84. doi: 10.1002/jcc.21178.

Abstract

Ramachandran maps of neutral and ionized HCO-Gly-NH2 and HCO-Ala-NH2 peptide models have been built at the B3LYP/6-31++G(d,p) level of calculation. Direct optimizations using B3LYP and the recently developed MPWB1K functional have also been carried out, as well as single-point calculations at the CCSD(T) level of theory with the 6-311++G(2df,2p) basis set. Results indicate that for both peptide models ionization can cause drastic changes in the shape of the PES in such a way that highly disallowed regions in neutral PES become low-energy regions in the radical cation surface. The structures localized in such regions, epsilonL+* and epsilonD+* are highly stabilized due to the formation of 2-centre-3-electron interactions between the two carbonyl oxygens. Inclusion of solvent effects by the conductor-like polarizable continuum model (CPCM) shows that the solute-solvent interaction energy plays an important role in determining the stability order.

摘要

在B3LYP/6 - 31++G(d,p)计算水平下构建了中性和离子化的HCO - Gly - NH2及HCO - Ala - NH2肽模型的拉马钱德兰图。还使用B3LYP和最近开发的MPWB1K泛函进行了直接优化,以及在CCSD(T)理论水平下使用6 - 311++G(2df,2p)基组进行了单点计算。结果表明,对于这两种肽模型,电离都会导致势能面形状发生剧烈变化,使得中性势能面中高度禁阻的区域在自由基阳离子表面成为低能区域。由于两个羰基氧之间形成了2中心3电子相互作用,位于这些区域的结构epsilonL+*和epsilonD+*高度稳定。通过类导体极化连续介质模型(CPCM)考虑溶剂效应表明,溶质 - 溶剂相互作用能在确定稳定性顺序方面起着重要作用。

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