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定向范德华键相互作用在分子砷酸盐固体结构测定中的作用。

Role of directed van der Waals bonded interactions in the determination of the structures of molecular arsenate solids.

作者信息

Gibbs G V, Wallace A F, Cox D F, Dove P M, Downs R T, Ross N L, Rosso K M

机构信息

Department of Geosciences, Virginia Tech, Blacksburg, Virginia 24061, USA.

出版信息

J Phys Chem A. 2009 Jan 29;113(4):736-49. doi: 10.1021/jp807666b.

Abstract

Bond paths, local energy density properties, and Laplacian, L(r) = -wedge(2)rho(r), composite isosurfaces of the electron density distributions were calculated for the intramolecular and intermolecular bonded interactions for molecular solids of As(2)O(3) and AsO(2) composition, an As(2)O(5) crystal, a number of arsenate molecules, and the arsenic metalloid, arsenolamprite. The directed intermolecular van der Waals As-O, O-O, and As-As bonded interactions are believed to serve as mainstays between the individual molecules in each of the molecular solids. As-O bond paths between the bonded atoms connect Lewis base charge concentrations and Lewis acid charge depletion domains, whereas the O-O and As-As paths connect Lewis base pair and Lewis acid pair domains, respectively, giving rise to sets of intermolecular directed bond paths. The alignment of the directed bond paths results in the periodic structures adopted by the arsenates. The arrangements of the As atoms in the claudetite polymorphs of As(2)O(3) and the As atoms in arsenolamprite are similar. Like the As(2)O(3) polymorphs, arsenolamprite is a molecular solid connected by relatively weak As-As intermolecular directed van der Waals bond paths between the layers of stronger As-As intramolecular bonded interactions. The bond critical point and local energy density properties of the intermolecular As-As bonded interactions in arsenolamprite are comparable with the As-As interactions in claudetite I. As such, the structure of claudetite I can be viewed as a stuffed derivative of the arsenolamprite structure with O atoms between pairs of As atoms comprising the layers of the structure. The cubic structure adopted by the arsenolite polymorph can be understood in terms of sets of directed acid-base As-O and base-base O-O pair domains and bond paths that radiate from the tetrahedral faces of its constituent molecules, serving as face-to-face key-lock mainstays in forming a periodic tetrahedral array of molecules rather than one based on some variant of close packing. The relatively dense structure and the corrugation of the layers in claudetite I can also be understood in terms of directed van der Waals As-O bonded interactions. Our study not only provides a new basis for understanding the crystal chemistry and the structures of the arsenates, but it also calls for a reappraisal of the concept of van der Waals bonded interactions, how the structures of molecular solids are viewed, and how the molecules in these solids are bonded in a periodic structure.

摘要

对于由As₂O₃和AsO₂组成的分子固体、一种As₂O₅晶体、多种砷酸盐分子以及类金属砷(毒砂),计算了其电子密度分布的键径、局部能量密度性质以及拉普拉斯量L(r)= -▽²ρ(r)的复合等值面,以研究分子内和分子间的键合相互作用。分子固体中,分子间定向的范德华As-O、O-O和As-As键合相互作用被认为是各个分子之间的主要支撑。键合原子之间的As-O键径连接路易斯碱电荷集中区和路易斯酸电荷耗尽区,而O-O和As-As键径分别连接路易斯碱对和路易斯酸对区域,从而产生分子间定向键径集。定向键径的排列导致了砷酸盐所采用的周期性结构。As₂O₃的纤锌矿多晶型物中的As原子排列与毒砂中的As原子排列相似。与As₂O₃多晶型物一样,毒砂是一种分子固体,通过层间相对较弱的分子间定向范德华As-As键径连接,这些键径存在于较强的分子内As-As键合相互作用层之间。毒砂中分子间As-As键合相互作用的键临界点和局部能量密度性质与纤锌矿I中的As-As相互作用相当。因此,纤锌矿I的结构可被视为毒砂结构的填充衍生物,在构成结构层的As原子对之间存在O原子。砷华多晶型物所采用的立方结构可以从定向酸碱As-O和碱碱O-O对域以及从其组成分子的四面体表面辐射出的键径集合来理解,这些键径在形成分子的周期性四面体阵列中起到面对面的钥匙锁(契合)支撑作用,而不是基于某种紧密堆积变体的结构。纤锌矿I中相对致密的结构和层的波纹也可以从定向范德华As-O键合相互作用的角度来理解。我们的研究不仅为理解砷酸盐的晶体化学和结构提供了新的基础,还呼吁重新评估范德华键合相互作用的概念、分子固体结构的看法以及这些固体中的分子如何在周期性结构中键合。

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