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用等温滴定量热法监测 RNA 的多步折叠途径。

Monitoring of an RNA multistep folding pathway by isothermal titration calorimetry.

机构信息

RNA Group, Département de Biochimie, Université de Sherbrooke, Sherbrooke, Québec, Canada.

出版信息

Biophys J. 2009 Jan;96(1):132-40. doi: 10.1016/j.bpj.2008.09.033.

DOI:10.1016/j.bpj.2008.09.033
PMID:19134473
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2710038/
Abstract

Isothermal titration calorimetry was used to monitor the energetic landscape of a catalytic RNA, specifically that of the hepatitis delta virus ribozyme. Using mutants that isolated various tertiary interactions, the thermodynamic parameters of several ribozyme-substrate intermediates were determined. The results shed light on the impact of several tertiary interactions on the global structure of the ribozyme. In addition, the data indicate that the formation of the P1.1 pseudoknot is the limiting step of the molecular mechanism. Last, as illustrated here, isothermal titration calorimetry appears to be a method of choice for the elucidation of an RNA's folding pathway.

摘要

等温滴定量热法被用于监测催化 RNA 的能量景观,特别是乙型肝炎 delta 病毒核酶。通过使用分离各种三级相互作用的突变体,确定了几种核酶-底物中间物的热力学参数。结果揭示了几种三级相互作用对核酶整体结构的影响。此外,数据表明 P1.1 假结的形成是分子机制的限速步骤。最后,如这里所示,等温滴定量热法似乎是阐明 RNA 折叠途径的首选方法。

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本文引用的文献

1
A novel structural rearrangement of hepatitis delta virus antigenomic ribozyme.丁型肝炎病毒反基因组核酶的一种新型结构重排。
Nucleic Acids Res. 2007;35(20):6820-31. doi: 10.1093/nar/gkm674. Epub 2007 Oct 11.
2
Applications of isothermal titration calorimetry in RNA biochemistry and biophysics.等温滴定量热法在RNA生物化学与生物物理学中的应用
Biopolymers. 2007;87(5-6):293-301. doi: 10.1002/bip.20816.
3
The interaction networks of structured RNAs.结构化RNA的相互作用网络。
Nucleic Acids Res. 2006;34(22):6587-604. doi: 10.1093/nar/gkl963. Epub 2006 Nov 28.
4
Examination of the folding pathway of the antigenomic hepatitis delta virus ribozyme reveals key interactions of the L3 loop.对反基因组丁型肝炎病毒核酶折叠途径的研究揭示了L3环的关键相互作用。
RNA. 2007 Jan;13(1):44-54. doi: 10.1261/rna.263407. Epub 2006 Nov 14.
5
Nucleobase catalysis in ribozyme mechanism.核酶机制中的核碱基催化作用。
Curr Opin Chem Biol. 2006 Oct;10(5):455-64. doi: 10.1016/j.cbpa.2006.08.014. Epub 2006 Aug 28.
6
Heat capacity changes associated with DNA duplex formation: salt- and sequence-dependent effects.与DNA双链体形成相关的热容量变化:盐和序列依赖性效应。
Biochemistry. 2006 Jan 17;45(2):604-16. doi: 10.1021/bi0517178.
7
Structure, folding and mechanisms of ribozymes.核酶的结构、折叠与作用机制
Curr Opin Struct Biol. 2005 Jun;15(3):313-23. doi: 10.1016/j.sbi.2005.05.002.
8
Heat capacity changes in RNA folding: application of perturbation theory to hammerhead ribozyme cold denaturation.RNA折叠中的热容变化:微扰理论在锤头状核酶冷变性中的应用
Nucleic Acids Res. 2004 Jul 28;32(13):3967-76. doi: 10.1093/nar/gkh723. Print 2004.
9
Cross-linking experiments reveal the presence of novel structural features between a hepatitis delta virus ribozyme and its substrate.交联实验揭示了丁型肝炎病毒核酶与其底物之间存在新的结构特征。
RNA. 2004 Jul;10(7):1059-72. doi: 10.1261/rna.7230604.
10
A conformational switch controls hepatitis delta virus ribozyme catalysis.一种构象转换控制丁型肝炎病毒核酶催化作用。
Nature. 2004 May 13;429(6988):201-5. doi: 10.1038/nature02522.