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核糖核酸组:协调基因表达的主导力量。

The ribonome: a dominant force in co-ordinating gene expression.

作者信息

Mansfield Kyle D, Keene Jack D

机构信息

Department of Molecular Genetics & Microbiology, Duke University Medical Center, Durham, North Carolina, 27710, USA.

出版信息

Biol Cell. 2009 Mar;101(3):169-81. doi: 10.1042/BC20080055.

Abstract

The ribonome is the total cellular complement of RNAs and their regulatory factors functioning dynamically in time and space within ribonucleoprotein complexes. We theorize that the ribonome is an ancient central co-ordinator that has evolved to communicate on multiple levels to the proteome on the one hand (feed-forward), and the transcriptome and RNA processing machinery on the other (feed-back). Furthermore, the ribonome can potentially communicate to other cells horizontally with implications for biological information transfer and for the evolution of both RNA and DNA operating systems. The post-transcriptional RNA operon theory of co-regulated gene expression accounts for the co-ordinated dynamics of RNA-binding proteins within the cellular ribonome, thus allowing for the recombination and remodelling of the RNPs (ribonucleoproteins) to generate new combinations of functionally related proteins. Thus, post-transcriptional RNA operons form the core of the ribonomic operating system in which both their control and co-ordination govern outcomes. Within the ribonome, RNA-binding proteins control one another's mRNAs to keep the global mRNA environment in balance. We argue that these post-transcriptional ribonomic systems provide an information management and distribution centre for evolutionary expansion of multicellularity in tissues, organs, organisms, and their communities.

摘要

核糖核酸组是细胞内RNA及其调控因子的总和,它们在核糖核蛋白复合物中在时间和空间上动态发挥作用。我们推测,核糖核酸组是一个古老的核心协调者,它一方面进化为与蛋白质组在多个层面进行交流(前馈),另一方面与转录组和RNA加工机制进行交流(反馈)。此外,核糖核酸组可能与其他细胞进行横向交流,这对生物信息传递以及RNA和DNA操作系统的进化都有影响。转录后RNA操纵子的共调控基因表达理论解释了细胞核糖核酸组内RNA结合蛋白的协调动态,从而允许核糖核蛋白(RNP)进行重组和重塑,以产生功能相关蛋白的新组合。因此,转录后RNA操纵子构成了核糖核酸组操作系统的核心,其控制和协调决定了结果。在核糖核酸组内,RNA结合蛋白相互控制彼此的mRNA,以保持整体mRNA环境的平衡。我们认为,这些转录后核糖核酸组系统为组织、器官、生物体及其群落中多细胞性的进化扩展提供了一个信息管理和分配中心。

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J Neurochem. 2008 Sep;106(6):2288-301. doi: 10.1111/j.1471-4159.2008.05561.x. Epub 2008 Jul 8.
7
RNA-binding proteins in human genetic disease.
Trends Genet. 2008 Aug;24(8):416-25. doi: 10.1016/j.tig.2008.05.004. Epub 2008 Jul 1.
8
Signalling pathways regulating nucleo-cytoplasmic shuttling of the mRNA-binding protein HuR.
Cell Signal. 2008 Dec;20(12):2165-73. doi: 10.1016/j.cellsig.2008.05.007. Epub 2008 May 23.
9
Post-transcriptional control of gene expression through subcellular relocalization of mRNA binding proteins.
Biochem Pharmacol. 2008 Dec 1;76(11):1395-403. doi: 10.1016/j.bcp.2008.05.022. Epub 2008 Jul 9.
10
Yeast mitochondrial biogenesis: a role for the PUF RNA-binding protein Puf3p in mRNA localization.
PLoS One. 2008 Jun 4;3(6):e2293. doi: 10.1371/journal.pone.0002293.

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