Gautieri Alfonso, Vesentini Simone, Redaelli Alberto, Buehler Markus J
Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Protein Sci. 2009 Jan;18(1):161-8. doi: 10.1002/pro.21.
Osteogenesis imperfecta (OI) is a genetic disease characterized by fragile bones, skeletal deformities and, in severe cases, prenatal death that affects more than 1 in 10,000 individuals. Here we show by full atomistic simulation in explicit solvent that OI mutations have a significant influence on the mechanical properties of single tropocollagen molecules, and that the severity of different forms of OI is directly correlated with the reduction of the mechanical stiffness of individual tropocollagen molecules. The reduction of molecular stiffness provides insight into the molecular-scale mechanisms of the disease. The analysis of the molecular mechanisms reveals that physical parameters of side-chain volume and hydropathy index of the mutated residue control the loss of mechanical stiffness of individual tropocollagen molecules. We propose a model that enables us to predict the loss of stiffness based on these physical characteristics of mutations. This finding provides an atomistic-level mechanistic understanding of the role of OI mutations in defining the properties of the basic protein constituents, which could eventually lead to new strategies for diagnosis and treatment the disease. The focus on material properties and their role in genetic diseases is an important, yet so far only little explored, aspect in studying the mechanisms that lead to pathological conditions. The consideration of how material properties change in diseases could lead to a new paradigm that may expand beyond the focus on biochemical readings alone and include a characterization of material properties in diagnosis and treatment, an effort referred to as materiomics.
成骨不全症(OI)是一种遗传性疾病,其特征为骨骼脆弱、骨骼畸形,在严重情况下会导致产前死亡,每10000多人中就有1人受其影响。在此,我们通过在显式溶剂中的全原子模拟表明,OI突变对单个原胶原蛋白分子的力学性能有显著影响,并且不同形式的OI严重程度与单个原胶原蛋白分子力学刚度的降低直接相关。分子刚度的降低为该疾病的分子尺度机制提供了见解。对分子机制的分析表明,突变残基的侧链体积和亲水性指数等物理参数控制着单个原胶原蛋白分子力学刚度的丧失。我们提出了一个模型,该模型使我们能够基于这些突变的物理特征预测刚度的丧失。这一发现为OI突变在定义基本蛋白质成分特性中的作用提供了原子水平的机制理解,最终可能会带来诊断和治疗该疾病的新策略。关注材料特性及其在遗传疾病中的作用是研究导致病理状况机制的一个重要方面,但迄今为止探索较少。考虑疾病中材料特性如何变化可能会导致一种新的范式,这种范式可能会超越仅关注生化读数的范畴,在诊断和治疗中纳入材料特性的表征,这一努力被称为材料组学。