Viana Matheus Palhares, Tanck Esther, Beletti Marcelo Emílio, Costa Luciano da Fontoura
Institute of Physics of São Carlos, University of São Paulo, São Carlos, Brazil.
Mol Biosyst. 2009 Mar;5(3):255-61. doi: 10.1039/b814188f. Epub 2009 Jan 12.
Cortical bones, essential for mechanical support and structure in many animals, involve a large number of canals organized in intricate fashion. By using state-of-the art image analysis and computer graphics, the 3D reconstruction of a whole bone (phalange) of a young chicken was obtained and represented in terms of a complex network where each canal was associated to an edge and every confluence of three or more canals yielded a respective node. The representation of the bone canal structure as a complex network has allowed several methods to be applied in order to characterize and analyze the canal system organization and the robustness. First, the distribution of the node degrees (i.e. the number of canals connected to each node) confirmed previous indications that bone canal networks follow a power law, and therefore present some highly connected nodes (hubs). The bone network was also found to be partitioned into communities or modules, i.e. groups of nodes which are more intensely connected to one another than with the rest of the network. We verified that each community exhibited distinct topological properties that are possibly linked with their specific function. In order to better understand the organization of the bone network, its resilience to two types of failures (random attack and cascaded failures) was also quantified comparatively to randomized and regular counterparts. The results indicate that the modular structure improves the robustness of the bone network when compared to a regular network with the same average degree and number of nodes. The effects of disease processes (e.g., osteoporosis) and mutations in genes (e.g., BMP4) that occur at the molecular level can now be investigated at the mesoscopic level by using network based approaches.
皮质骨对许多动物的机械支撑和结构至关重要,它包含大量以复杂方式组织的管道。通过使用先进的图像分析和计算机图形技术,获得了一只幼鸡完整骨骼(指骨)的三维重建,并以复杂网络的形式呈现,其中每个管道与一条边相关联,三个或更多管道的每个汇合处产生一个相应的节点。将骨管道结构表示为复杂网络使得可以应用多种方法来表征和分析管道系统的组织和稳健性。首先,节点度的分布(即连接到每个节点的管道数量)证实了先前的迹象,即骨管道网络遵循幂律,因此存在一些高度连接的节点(枢纽)。还发现骨网络被划分为群落或模块,即彼此之间连接比与网络其余部分更紧密的节点组。我们验证了每个群落都表现出可能与其特定功能相关的独特拓扑特性。为了更好地理解骨网络的组织,还将其对两种类型故障(随机攻击和级联故障)的弹性与随机和规则对应物进行了比较量化。结果表明,与具有相同平均度和节点数的规则网络相比,模块化结构提高了骨网络的稳健性。现在可以通过基于网络的方法在介观水平上研究在分子水平上发生的疾病过程(例如骨质疏松症)和基因突变(例如BMP4)的影响。