Farb Joshua N, Morrical Scott W
Department of Biochemistry, University of Vermont College of Medicine, Burlington, VT 05405, USA.
Nucleic Acids Res. 2009 Apr;37(7):2336-45. doi: 10.1093/nar/gkp096. Epub 2009 Feb 25.
Bacteriophage T4 homologous recombination events are promoted by presynaptic filaments of UvsX recombinase bound to single-stranded DNA (ssDNA). UvsY, the phage recombination mediator protein, promotes filament assembly in a concentration-dependent manner, stimulating UvsX at stoichiometric concentrations but inhibiting at higher concentrations. Recent work demonstrated that UvsX-H195Q/A mutants exhibit decreased ssDNA-binding affinity and altered enzymatic properties. Here, we show that unlike wild-type UvsX, the ssDNA-dependent ATPase activities of UvsX-H195Q/A are strongly inhibited by both low and high concentrations of UvsY protein. This inhibition is partially relieved by UvsY mutants with decreased ssDNA-binding affinity. The UvsX-H195Q mutant retains weak DNA strand exchange activity that is inhibited by wild-type UvsY, but stimulated by ssDNA-binding compromised UvsY mutants. These and other results support a mechanism in which the formation of competent presynaptic filaments requires a hand-off of ssDNA from UvsY to UvsX, with the efficiency of the hand-off controlled by the relative ssDNA-binding affinities of the two proteins. Other results suggest that UvsY acts as a nucleotide exchange factor for UvsX, enhancing filament stability by increasing the lifetime of the high-affinity, ATP-bound form of the enzyme. Our findings reveal new details of the UvsX/UvsY relationship in T4 recombination, which may have parallels in other recombinase/mediator systems.
噬菌体T4的同源重组事件由与单链DNA(ssDNA)结合的UvsX重组酶的突触前细丝促进。噬菌体重组介导蛋白UvsY以浓度依赖的方式促进细丝组装,在化学计量浓度下刺激UvsX,但在更高浓度下抑制UvsX。最近的研究表明,UvsX-H195Q/A突变体表现出降低的ssDNA结合亲和力和改变的酶活性。在这里,我们表明,与野生型UvsX不同,UvsX-H195Q/A的ssDNA依赖性ATP酶活性受到低浓度和高浓度UvsY蛋白的强烈抑制。这种抑制作用被ssDNA结合亲和力降低的UvsY突变体部分缓解。UvsX-H195Q突变体保留了弱的DNA链交换活性,该活性被野生型UvsY抑制,但被ssDNA结合受损的UvsY突变体刺激。这些结果以及其他结果支持了一种机制,即有能力的突触前细丝的形成需要将ssDNA从UvsY传递给UvsX,传递效率由两种蛋白质的相对ssDNA结合亲和力控制。其他结果表明,UvsY作为UvsX的核苷酸交换因子,通过增加酶的高亲和力、ATP结合形式的寿命来增强细丝稳定性。我们的发现揭示了T4重组中UvsX/UvsY关系的新细节,这可能在其他重组酶/介导系统中有相似之处。