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膜上碗状寡聚结构作为DegP在蛋白质质量控制中的新功能形式。

Bowl-shaped oligomeric structures on membranes as DegP's new functional forms in protein quality control.

作者信息

Shen Qing-Tao, Bai Xiao-Chen, Chang Lei-Fu, Wu Yi, Wang Hong-Wei, Sui Sen-Fang

机构信息

Department of Biological Sciences and Biotechnology, State-Key Laboratory of Biomembrane and Membrane Biotechnology, Tsinghua University, Beijing 100084, China.

出版信息

Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4858-63. doi: 10.1073/pnas.0811780106. Epub 2009 Mar 2.

DOI:10.1073/pnas.0811780106
PMID:19255437
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2660739/
Abstract

In the periplasm of Escherichia coli, DegP (also known as HtrA), which has both chaperone-like and proteolytic activities, prevents the accumulation of toxic misfolded and unfolded polypeptides. In solution, upon binding to denatured proteins, DegP forms large cage-like structures. Here, we show that DegP forms a range of bowl-shaped structures, independent of substrate proteins, each with a 4-, 5-, or 6-fold symmetry and all with a DegP trimer as the structural unit, on lipid membranes. These membrane-bound DegP assemblies have the capacity to recruit and process substrates in the bowl chamber, and they exhibit higher proteolytic and lower chaperone-like activities than DegP in solution. Our findings imply that DegP might regulate its dual roles during protein quality control, depending on its assembly state in the narrow bacterial envelope.

摘要

在大肠杆菌的周质空间中,具有伴侣样活性和蛋白水解活性的DegP(也称为HtrA)可防止有毒的错误折叠和未折叠多肽的积累。在溶液中,DegP与变性蛋白结合后会形成大型笼状结构。在此,我们发现DegP在脂质膜上形成一系列碗状结构,这些结构独立于底物蛋白,每个结构具有四重、五重或六重对称性,且均以DegP三聚体作为结构单元。这些膜结合的DegP聚集体有能力在碗状腔室中招募和处理底物,并且它们比溶液中的DegP表现出更高的蛋白水解活性和更低的伴侣样活性。我们的研究结果表明,DegP可能在蛋白质质量控制过程中根据其在狭窄细菌包膜中的组装状态来调节其双重作用。

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Proc Natl Acad Sci U S A. 2009 Mar 24;106(12):4858-63. doi: 10.1073/pnas.0811780106. Epub 2009 Mar 2.
2
Competing stress-dependent oligomerization pathways regulate self-assembly of the periplasmic protease-chaperone DegP.竞争的应激相关寡聚化途径调节周质蛋白酶-伴侣 DegP 的自组装。
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本文引用的文献

1
Activation of DegP chaperone-protease via formation of large cage-like oligomers upon binding to substrate proteins.DegP伴侣蛋白酶通过与底物蛋白结合形成大型笼状寡聚体而被激活。
Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11939-44. doi: 10.1073/pnas.0805464105. Epub 2008 Aug 12.
2
Structural basis for the regulated protease and chaperone function of DegP.DegP的调控蛋白酶和伴侣功能的结构基础
Nature. 2008 Jun 12;453(7197):885-90. doi: 10.1038/nature07004. Epub 2008 May 21.
3
Allosteric activation of HtrA protease DegP by stress signals during bacterial protein quality control.细菌蛋白质质量控制过程中应激信号对HtrA蛋白酶DegP的变构激活作用。
Angew Chem Int Ed Engl. 2008;47(7):1332-4. doi: 10.1002/anie.200703273.
4
Characterization of the chaperone-like activity of HtrA (DegP) protein from Escherichia coli under the conditions of heat shock.热休克条件下大肠杆菌HtrA(DegP)蛋白伴侣样活性的表征
Arch Biochem Biophys. 2007 Aug 1;464(1):80-9. doi: 10.1016/j.abb.2007.04.006. Epub 2007 Apr 23.
5
The inner cavity of Escherichia coli DegP protein is not essential for molecular chaperone and proteolytic activity.大肠杆菌DegP蛋白的内腔对于分子伴侣和蛋白水解活性并非必不可少。
J Bacteriol. 2007 Feb;189(3):706-16. doi: 10.1128/JB.01334-06. Epub 2006 Nov 22.
6
UCSF Chimera--a visualization system for exploratory research and analysis.加州大学旧金山分校奇美拉——一个用于探索性研究与分析的可视化系统。
J Comput Chem. 2004 Oct;25(13):1605-12. doi: 10.1002/jcc.20084.
7
The N-terminal region of HtrA heat shock protease from Escherichia coli is essential for stabilization of HtrA primary structure and maintaining of its oligomeric structure.来自大肠杆菌的HtrA热休克蛋白酶的N端区域对于稳定HtrA的一级结构和维持其寡聚结构至关重要。
Biochim Biophys Acta. 2003 Jul 30;1649(2):171-82. doi: 10.1016/s1570-9639(03)00170-5.
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Ring-like pore structures of SecA: implication for bacterial protein-conducting channels.SecA的环状孔结构:对细菌蛋白质传导通道的启示
Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4221-6. doi: 10.1073/pnas.0737415100. Epub 2003 Mar 17.
9
Protease-deficient DegP suppresses lethal effects of a mutant OmpC protein by its capture.蛋白酶缺陷型DegP通过捕获突变型OmpC蛋白来抑制其致死效应。
J Bacteriol. 2003 Jan;185(1):148-54. doi: 10.1128/JB.185.1.148-154.2003.
10
Crystal structure of DegP (HtrA) reveals a new protease-chaperone machine.DegP(HtrA)的晶体结构揭示了一种新型蛋白酶-伴侣蛋白机器。
Nature. 2002 Mar 28;416(6879):455-9. doi: 10.1038/416455a.