Liepelt S, Lipowsky R
Max Planck Institute of Colloids and Interfaces, Science Park Golm, 14424 Potsdam, Germany.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011917. doi: 10.1103/PhysRevE.79.011917. Epub 2009 Jan 22.
The velocity and the adenosine triphosphate (ATP) hydrolysis rate of the molecular motor kinesin are studied using a general network representation for the motor, which incorporates both the energetics of ATP hydrolysis and the experimentally observed separation of time scales between chemical and mechanical transitions. Both the motor velocity and its hydrolysis rate can be expressed as superpositions of excess fluxes for the directed cycles (or dicycles) of the network. The sign of these dicycle excess fluxes depends only on two thermodynamic control parameters as provided by the load force F and the chemical energy Deltamicro released during the hydrolysis of a single ATP molecule. In contrast, both the motor velocity and its hydrolysis rate depend, in general, on the load force F as well as on the three concentrations of ATP, adenosine diphosphate (ADP), and inorganic phosphate (P), separately. Thus, in order to represent the different operation modes of the motor in the (F,Deltamicro) plane, one has to specify two concentrations such as the product concentrations [ADP] and [P]. As a result, we find four different operation modes corresponding to the four possible combinations of ATP hydrolysis or synthesis with forward or backward mechanical steps. Our operation diagram implies in particular that backward steps are coupled to ATP hydrolysis for sufficiently large ATP concentrations, but to ATP synthesis for sufficiently large ADP and/or P concentrations.
利用一种分子马达驱动蛋白的通用网络表示法,研究了驱动蛋白的速度和三磷酸腺苷(ATP)水解速率,该表示法既包含了ATP水解的能量学,又包含了化学和机械转变之间实验观察到的时间尺度分离。马达速度及其水解速率都可以表示为网络定向循环(或双循环)的过量通量叠加。这些双循环过量通量的符号仅取决于负载力F和单个ATP分子水解过程中释放的化学能Δμ这两个热力学控制参数。相比之下,一般来说,马达速度及其水解速率分别取决于负载力F以及ATP、二磷酸腺苷(ADP)和无机磷酸(P)的三种浓度。因此,为了在(F,Δμ)平面中表示马达的不同运行模式,必须指定两种浓度,例如产物浓度[ADP]和[P]。结果,我们发现了四种不同的运行模式,分别对应于ATP水解或合成与向前或向后机械步骤的四种可能组合。我们的运行图特别表明,对于足够高的ATP浓度,向后步骤与ATP水解耦合,但对于足够高的ADP和/或P浓度,向后步骤与ATP合成耦合。