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过阻尼活性粒子在棘轮势场中的行走运动。

Walking motion of an overdamped active particle in a ratchet potential.

作者信息

Lee Kong-Ju-Bock, Kim Chul Koo, Chung Myung-Hoon

机构信息

Department of Physics, Ewha Womans University, Seoul, 120-750 Korea ; Korea Institute for Advanced Study, Seoul, 130-722 Korea.

出版信息

J Biol Phys. 2012 Mar;38(2):305-16. doi: 10.1007/s10867-011-9249-1. Epub 2011 Dec 2.

Abstract

An active particle can convert its internal energy into mechanical work. We study a generalized energy-depot model of an overdamped active particle in a ratchet potential. Using well-known biological parameters for kinesin-1 and modeling ATP influx as a pulsed energy supply, we apply our model to the molecular motor system. We find that our simple model can capture the essential properties of the kinesin motor such as forward stepping, stalling, backward stepping, dependence on ATP concentration, and stall force. Our model might be quite universal in the sense that it is able to describe dynamics of various types of motors as long as realistic parameters for each motor species are adopted.

摘要

一个活性粒子可以将其内能转化为机械功。我们研究了处于棘轮势中的过阻尼活性粒子的广义能量库模型。利用驱动蛋白-1的已知生物学参数,并将ATP流入建模为脉冲能量供应,我们将模型应用于分子马达系统。我们发现,我们的简单模型能够捕捉驱动蛋白马达的基本特性,如向前步进、失速、向后步进、对ATP浓度的依赖性以及失速力。从能够描述各种类型马达的动力学这一意义上来说,我们的模型可能具有相当的通用性,只要采用每种马达物种的实际参数即可。

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本文引用的文献

1
Collective behavior of antagonistically acting kinesin-1 motors.拮抗作用的肌球蛋白-1 马达的集体行为。
Phys Rev Lett. 2010 Sep 17;105(12):128103. doi: 10.1103/PhysRevLett.105.128103.
3
Kinesin's backsteps under mechanical load.驱动蛋白在机械负载下的后退步。
Phys Chem Chem Phys. 2009 Jun 28;11(24):4899-910. doi: 10.1039/b903536b. Epub 2009 May 18.
4
Canonical active Brownian motion.标准主动布朗运动
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Feb;79(2 Pt 1):021120. doi: 10.1103/PhysRevE.79.021120. Epub 2009 Feb 18.
5
Operation modes of the molecular motor kinesin.分子马达驱动蛋白的运作模式。
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011917. doi: 10.1103/PhysRevE.79.011917. Epub 2009 Jan 22.
8
Kinesin's network of chemomechanical motor cycles.驱动蛋白的化学机械运动循环网络。
Phys Rev Lett. 2007 Jun 22;98(25):258102. doi: 10.1103/PhysRevLett.98.258102. Epub 2007 Jun 20.
9
Evolution of microorganism locomotion induced by starvation.饥饿诱导的微生物运动进化。
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jul;76(1 Pt 1):011919. doi: 10.1103/PhysRevE.76.011919. Epub 2007 Jul 25.

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