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植物乳杆菌基因组中的大型基因间十字形样超级基序

Large intergenic cruciform-like supermotifs in the Lactobacillus plantarum genome.

作者信息

Wels Michiel, Bongers Roger S, Boekhorst Jos, Molenaar Douwe, Sturme Mark, de Vos Willem M, Siezen Roland J, Kleerebezem Michiel

机构信息

TI Food and Nutrition, Wageningen, The Netherlands.

出版信息

J Bacteriol. 2009 May;191(10):3420-3. doi: 10.1128/JB.01672-08. Epub 2009 Mar 13.

Abstract

Twenty-four Lactobacillus plantarum supermotifs (LPSMs) with lengths from approximately 800 to 1,000 nucleotides were identified in the L. plantarum genome. LPSMs were conserved in other L. plantarum strains but not in other species. Secondary structure analysis predicted that LPSMs may fold into cruciform-like structures. Preliminary experiments indicate that the LPSMs are transcribed.

摘要

在植物乳杆菌基因组中鉴定出24个长度约为800至1000个核苷酸的植物乳杆菌超级基序(LPSMs)。LPSMs在其他植物乳杆菌菌株中保守,但在其他物种中不保守。二级结构分析预测LPSMs可能折叠成十字形结构。初步实验表明LPSMs被转录。

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本文引用的文献

1
Small CRISPR RNAs guide antiviral defense in prokaryotes.
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2
Comparative analysis of CRISPR loci in lactic acid bacteria genomes.
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3
CRISPR provides acquired resistance against viruses in prokaryotes.
Science. 2007 Mar 23;315(5819):1709-12. doi: 10.1126/science.1138140.
4
Comparative genomics of the lactic acid bacteria.
Proc Natl Acad Sci U S A. 2006 Oct 17;103(42):15611-6. doi: 10.1073/pnas.0607117103. Epub 2006 Oct 9.
5
Riboswitches and the role of noncoding RNAs in bacterial metabolic control.
Curr Opin Chem Biol. 2005 Dec;9(6):594-602. doi: 10.1016/j.cbpa.2005.09.016. Epub 2005 Oct 13.
6
Exploring Lactobacillus plantarum genome diversity by using microarrays.
J Bacteriol. 2005 Sep;187(17):6119-27. doi: 10.1128/JB.187.17.6119-6127.2005.
7
MUSCLE: a multiple sequence alignment method with reduced time and space complexity.
BMC Bioinformatics. 2004 Aug 19;5:113. doi: 10.1186/1471-2105-5-113.
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Cruciform DNA structure underlies the etiology for palindrome-mediated human chromosomal translocations.
J Biol Chem. 2004 Aug 20;279(34):35377-83. doi: 10.1074/jbc.M400354200. Epub 2004 Jun 20.
9
Visualization for genomics: the Microbial Genome Viewer.
Bioinformatics. 2004 Jul 22;20(11):1812-4. doi: 10.1093/bioinformatics/bth159. Epub 2004 Feb 26.
10
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood.
Syst Biol. 2003 Oct;52(5):696-704. doi: 10.1080/10635150390235520.

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