Dikhit Manas Ranjan, Rana Sindhu Prava, Das Pradeep, Sahoo Ganesh Chandra
BioMedical Informatics Division, Rajendra Memorial Research Institute of Medical Sciences, Agam Kuan, Patna, India - 800007.
Bioinformation. 2009;3(7):299-302. doi: 10.6026/97320630003299. Epub 2009 Feb 28.
Databases containing proteomic information have become indispensable for virology studies. As the gap between the amount of sequence information and functional characterization widens, increasing efforts are being directed to the development of databases. For virologist, it is therefore desirable to have a single data collection point which integrates research related data from different domains. CHPVDB is our effort to provide virologist such a one-step information center. We describe herein the creation of CHPVDB, a new database that integrates information of different proteins in to a single resource. For basic curation of protein information, the database relies on features from other selected databases, servers and published reports. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Chandipura virus (CHPV) by SVMProt and related tools.
The database is freely available at http://chpvdb.biomedinformri.org/.
包含蛋白质组学信息的数据库已成为病毒学研究不可或缺的工具。随着序列信息数量与功能表征之间的差距不断扩大,人们越来越致力于数据库的开发。因此,对于病毒学家来说,拥有一个整合来自不同领域研究相关数据的单一数据收集点是很有必要的。CHPVDB就是我们为病毒学家提供这样一个一站式信息中心所做的努力。我们在此描述CHPVDB的创建,这是一个将不同蛋白质信息整合到单一资源中的新数据库。对于蛋白质信息的基本整理,该数据库依赖于其他选定数据库、服务器和已发表报告的特征。该数据库促进了分子分析、切割位点、通过SVMProt及相关工具分配给钱迪普拉病毒(CHPV)不同蛋白质的可能蛋白质功能家族之间的重要关系。