人纤维蛋白原的晶体结构。

Crystal structure of human fibrinogen.

作者信息

Kollman Justin M, Pandi Leela, Sawaya Michael R, Riley Marcia, Doolittle Russell F

机构信息

Department of Chemistry and Biochemistry and Division of Biology, University of California at San Diego, La Jolla, California 92093-0314, USA.

出版信息

Biochemistry. 2009 May 12;48(18):3877-86. doi: 10.1021/bi802205g.

Abstract

A crystal structure of human fibrinogen has been determined at approximately 3.3 A resolution. The protein was purified from human blood plasma, first by a cold ethanol precipitation procedure and then by stepwise chromatography on DEAE-cellulose. A product was obtained that was homogeneous on SDS-polyacrylamide gels. Nonetheless, when individual crystals used for X-ray diffraction were examined by SDS gel electrophoresis after data collection, two species of alpha chain were present, indicating that some proteolysis had occurred during the course of operations. Amino-terminal sequencing on post-X-ray crystals showed mostly intact native alpha- and gamma-chain sequences (the native beta chain is blocked). The overall structure differs from that of a native fibrinogen from chicken blood and those reported for a partially proteolyzed bovine fibrinogen in the nature of twist in the coiled-coil regions, likely due to weak forces imparted by unique crystal packing. As such, the structure adds to the inventory of possible conformations that may occur in solution. Other features include a novel interface with an antiparallel arrangement of beta chains and a unique tangential association of coiled coils from neighboring molecules. The carbohydrate groups attached to beta chains are unusually prominent, the full sweep of 11 sugar residues being positioned. As was the case for native chicken fibrinogen, no resolvable electron density could be associated with alphaC domains.

摘要

已确定人纤维蛋白原的晶体结构,分辨率约为3.3埃。该蛋白从人血浆中纯化得到,首先通过冷乙醇沉淀法,然后通过DEAE-纤维素分步色谱法。获得了在SDS-聚丙烯酰胺凝胶上呈均一性的产物。然而,在数据收集后,对用于X射线衍射的单个晶体进行SDS凝胶电泳检查时,发现存在两种α链,这表明在操作过程中发生了一些蛋白水解。对X射线衍射后的晶体进行氨基末端测序,结果显示大部分α链和γ链的天然序列完整(天然β链被封闭)。总体结构与鸡血中的天然纤维蛋白原以及报道的部分蛋白水解的牛纤维蛋白原的结构不同,这可能是由于独特的晶体堆积产生的弱作用力导致卷曲螺旋区域的扭曲性质不同。因此,该结构增加了溶液中可能出现的构象种类。其他特征包括一个具有β链反平行排列的新型界面以及相邻分子的卷曲螺旋独特的切向缔合。连接在β链上的碳水化合物基团异常突出,11个糖残基的完整排列清晰可见。与天然鸡纤维蛋白原的情况一样,αC结构域无法分辨出可解析的电子密度。

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