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分子置换法在来自图像板的蛋白质粉末数据中的应用。

Application of molecular replacement to protein powder data from image plates.

作者信息

Doebbler Jennifer A, Von Dreele Robert B

机构信息

Argonne National Laboratory, Argonne, IL 60439, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2009 Apr;65(Pt 4):348-55. doi: 10.1107/S0907444909003783. Epub 2009 Mar 19.

Abstract

Macromolecular structures can be solved via molecular replacement from powder diffraction data collected not only on multi-analyzer diffractometers but also on image plates. Diffraction peaks recorded on image plates are generally broader than those collected using an array of crystal analyzer detectors, but the image-plate data often allow the use of powder data to lower d-spacings. Owing to the high incidence of overlaps in powder patterns, which is especially evident for larger structures, a multi-pattern Pawley refinement is necessary in order to distinguish intensity peaks. This work utilized various salt concentrations to produce small lattice distortions, which resulted in shifts of Bragg peak positions, in a suite of five powder patterns. Using reflection structure factors obtained from this combined refinement, the structure of hen egg-white lysozyme was determined by molecular replacement using the 60% identical human lysozyme (PDB code 1lz1) as the search model. This work also expands upon previous work by presenting a full-scale multi-species analysis combined with an investigation of the sensitivity with regard to discrimination between incorrect fold types. To test the limits of this technique, extension to higher molecular-weight structures is ongoing.

摘要

大分子结构可以通过分子置换法来解析,该方法所依据的粉末衍射数据不仅可以从多分析仪衍射仪上收集,也可以从成像板上收集。成像板上记录的衍射峰通常比使用晶体分析仪探测器阵列收集的衍射峰更宽,但成像板数据通常允许使用更低d间距的粉末数据。由于粉末图谱中重叠现象的高发生率,这在较大结构中尤为明显,因此需要进行多图谱Pawley精修以区分强度峰。这项工作利用了不同的盐浓度来产生小的晶格畸变,这导致了一组五个粉末图谱中布拉格峰位置的移动。利用从这种联合精修中获得的反射结构因子,以60%同源的人溶菌酶(PDB代码1lz1)作为搜索模型,通过分子置换法确定了鸡蛋清溶菌酶的结构。这项工作还扩展了之前的工作,通过进行全面的多物种分析,并结合对区分错误折叠类型的灵敏度的研究。为了测试该技术的极限,正在进行向更高分子量结构的扩展。

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