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斑马鱼心室肌球蛋白重链(vmhc)启动子的瞬时和转基因分析:心室特异性基因表达的抑制机制。

Transient and transgenic analysis of the zebrafish ventricular myosin heavy chain (vmhc) promoter: an inhibitory mechanism of ventricle-specific gene expression.

作者信息

Zhang Ruilin, Xu Xiaolei

机构信息

Department of Biochemistry and Molecular Biology/Division of Cardiovascular Diseases, Mayo Clinic College of Medicine, Rochester, Minnesota, USA.

出版信息

Dev Dyn. 2009 Jun;238(6):1564-73. doi: 10.1002/dvdy.21929.

DOI:10.1002/dvdy.21929
PMID:19322764
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2756512/
Abstract

The zebrafish ventricular myosin heavy chain (vmhc) gene exhibits restricted expression in the ventricle. However, the molecular mechanism underlying this chamber-specific expression is unclear. Here, we exploited both transient and transgenic technologies to dissect the zebrafish vmhc promoter. We demonstrated that a combination of two transient assays in this animal model quickly identified chamber-specific cis-elements, isolating a 2.2 kb fragment upstream from the vmhc gene that can drive ventricle-specific expression. Furthermore, deletion analysis identified multiple cis-elements that exhibited cardiac-specific expression. To achieve chamber specificity, a distal element was required to coordinate with and suppress a proximal enhancer element. Finally, we discovered that Nkx2.5-binding sites (NKE) were essential for this repressive function. In summary, our study of the zebrafish vmhc promoter suggests that ventricle-specific expression is achieved through an inhibitory mechanism that suppresses expression in the atrium. Developmental Dynamics 238:1564-1573, 2009. (c) 2009 Wiley-Liss, Inc.

摘要

斑马鱼心室肌球蛋白重链(vmhc)基因在心室中呈现限制性表达。然而,这种特定腔室表达背后的分子机制尚不清楚。在此,我们利用瞬时转染和转基因技术剖析斑马鱼vmhc启动子。我们证明,在该动物模型中进行的两种瞬时分析相结合,能够快速鉴定出特定腔室的顺式元件,分离出vmhc基因上游一个2.2 kb的片段,该片段可驱动心室特异性表达。此外,缺失分析确定了多个呈现心脏特异性表达的顺式元件。为实现腔室特异性,一个远端元件需要与近端增强子元件协同并抑制它。最后,我们发现Nkx2.5结合位点(NKE)对于这种抑制功能至关重要。总之,我们对斑马鱼vmhc启动子的研究表明,心室特异性表达是通过一种抑制心房表达的机制实现的。《发育动力学》238:1564 - 1573,2009年。(c)2009年威利 - 利斯出版公司。

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本文引用的文献

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Using TESS to predict transcription factor binding sites in DNA sequence.使用TESS预测DNA序列中的转录因子结合位点。
Curr Protoc Bioinformatics. 2008 Mar;Chapter 2:Unit 2.6. doi: 10.1002/0471250953.bi0206s21.
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Depletion of zebrafish essential and regulatory myosin light chains reduces cardiac function through distinct mechanisms.斑马鱼必需和调节性肌球蛋白轻链的缺失通过不同机制降低心脏功能。
Cardiovasc Res. 2008 Jul 1;79(1):97-108. doi: 10.1093/cvr/cvn073. Epub 2008 Mar 14.
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Transposons as tools for enhancer trap screens in vertebrates.转座子作为脊椎动物增强子捕获筛选的工具。
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Tol2: a versatile gene transfer vector in vertebrates.Tol2:一种在脊椎动物中通用的基因转移载体。
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