Onozato Junnosuke, Kumagai Atsuko, Sekizuka Tsuyoshi, Tazumi Akihiro, Moore John E, Millar B Cherie, Matsuda Motoo
Azabu University, Fuchinobe, Sagamihara, Japan.
J Basic Microbiol. 2009 Aug;49(4):342-9. doi: 10.1002/jobm.200800214.
A novel PCR primer pair for amplification of full-length cia B gene from thermophilic campylobacters, generated an amplicon of approximately 2.2 kilo base pairs (kbp) with all 18 isolates (n = 7 for urease-negative (UN) C. lari; n = 9 urease-positive thermophilic Campylobacter (UPTC); n = 1 C. jejuni; n = 1 C. coli). The putative open reading frame (ORF) of the cia B from C. lari isolates consisted of 1,833 bp similarly, but differing from those of C. jejuni and C. coli isolates. The putative promoter structures consisting of a semi-conserved T -rich sequence and a consensus sequence at the -10 region were identified upstream of the putative ORF in all the C. lari isolates. A start codon ATG and a probable ribosome binding site were also identified in all the isolates. In addition, two distinctly different and taxon (UN C. lari and UPTC) dependent hypothetically intrinsic rho -independent transcriptional terminators for the cia B were identified to occur within the C. lari. Reverse transcription-PCR analysis identified the transcription of cia B gene in the C. lari cells. The neighbor joining tree suggested that the nucleotide sequence information of the cia B had molecular discrimination efficacy among UN C. lari, UPTC, C. jejuni and C. coli organisms.
一种用于从嗜热弯曲杆菌中扩增全长cia B基因的新型PCR引物对,对所有18株分离菌(脲酶阴性(UN)的拉氏弯曲杆菌7株;脲酶阳性嗜热弯曲杆菌(UPTC)9株;空肠弯曲杆菌1株;结肠弯曲杆菌1株)均扩增出了约2.2千碱基对(kbp)的扩增子。拉氏弯曲杆菌分离株的cia B推定开放阅读框(ORF)同样由1833 bp组成,但与空肠弯曲杆菌和结肠弯曲杆菌分离株的不同。在所有拉氏弯曲杆菌分离株的推定ORF上游,均鉴定出了由富含T的半保守序列和-10区域的共有序列组成的推定启动子结构。在所有分离株中还鉴定出了起始密码子ATG和一个可能的核糖体结合位点。此外,在拉氏弯曲杆菌中鉴定出了两种明显不同且依赖分类单元(UN拉氏弯曲杆菌和UPTC)的cia B推定固有ρ非依赖性转录终止子。逆转录PCR分析确定了拉氏弯曲杆菌细胞中cia B基因的转录。邻接法树状图表明,cia B的核苷酸序列信息在UN拉氏弯曲杆菌、UPTC、空肠弯曲杆菌和结肠弯曲杆菌生物体之间具有分子鉴别效力。