Tokuriki Nobuhiko, Tawfik Dan S
Department of Biological Chemistry, Weizmann Institute of Science, Rehovot 76100, Israel.
Science. 2009 Apr 10;324(5924):203-7. doi: 10.1126/science.1169375.
The traditional view that proteins possess absolute functional specificity and a single, fixed structure conflicts with their marked ability to adapt and evolve new functions and structures. We consider an alternative, "avant-garde view" in which proteins are conformationally dynamic and exhibit functional promiscuity. We surmise that these properties are the foundation stones of protein evolvability; they facilitate the divergence of new functions within existing folds and the evolution of entirely new folds. Packing modes of proteins also affect their evolvability, and poorly packed, disordered, and conformationally diverse proteins may exhibit high evolvability. This dynamic view of protein structure, function, and evolvability is extrapolated to describe hypothetical scenarios for the evolution of the early proteins and future research directions in the area of protein dynamism and evolution.
传统观点认为蛋白质具有绝对的功能特异性和单一、固定的结构,这与它们显著的适应能力以及演化出新功能和新结构的能力相冲突。我们考虑另一种“先锋观点”,即蛋白质在构象上是动态的,且表现出功能混杂性。我们推测这些特性是蛋白质可进化性的基石;它们促进了新功能在现有折叠结构中的分化以及全新折叠结构的演化。蛋白质的堆积模式也会影响其可进化性,堆积不佳、无序且构象多样的蛋白质可能具有较高的可进化性。这种关于蛋白质结构、功能和可进化性的动态观点被外推,以描述早期蛋白质进化的假设情景以及蛋白质动态性和进化领域未来的研究方向。