CATMAID：用于海量图像数据的协作注释工具包。

CATMAID: collaborative annotation toolkit for massive amounts of image data.

机构信息

Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.

出版信息

Bioinformatics. 2009 Aug 1;25(15):1984-6. doi: 10.1093/bioinformatics/btp266. Epub 2009 Apr 17.

DOI:10.1093/bioinformatics/btp266

PMID:19376822

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2712332/

Abstract

SUMMARY

High-resolution, three-dimensional (3D) imaging of large biological specimens generates massive image datasets that are difficult to navigate, annotate and share effectively. Inspired by online mapping applications like GoogleMaps, we developed a decentralized web interface that allows seamless navigation of arbitrarily large image stacks. Our interface provides means for online, collaborative annotation of the biological image data and seamless sharing of regions of interest by bookmarking. The CATMAID interface enables synchronized navigation through multiple registered datasets even at vastly different scales such as in comparisons between optical and electron microscopy.

AVAILABILITY

http://fly.mpi-cbg.de/catmaid.

摘要

高分辨率、三维（3D）成像的大型生物标本生成海量的图像数据集，难以有效地进行导航、注释和共享。受 GoogleMaps 等在线地图应用程序的启发，我们开发了一个去中心化的网络界面，允许对任意大的图像堆栈进行无缝导航。我们的界面提供了在线协作注释生物图像数据的方法，并通过书签实现了感兴趣区域的无缝共享。CATMAID 界面允许通过多个已注册的数据集进行同步导航，即使在非常不同的尺度下（例如在光学显微镜和电子显微镜之间的比较中）也是如此。