Payne Joshua L, Eppstein Margaret J
Department of Computer Science, The University of Vermont, Burlington, Vermont, USA.
Evol Comput. 2009 Summer;17(2):203-29. doi: 10.1162/evco.2009.17.2.203.
In complex adaptive systems, the topological properties of the interaction network are strong governing influences on the rate of flow of information throughout the system. For example, in epidemiological models, the structure of the underlying contact network has a pronounced impact on the rate of spread of infectious disease throughout a population. Similarly, in evolutionary systems, the topology of potential mating interactions (i.e., population structure) affects the rate of flow of genetic information and therefore affects selective pressure. One commonly employed method for quantifying selective pressure in evolutionary algorithms is through the analysis of the dynamics with which a single favorable mutation spreads throughout the population (a.k.a. takeover time analysis). While models of takeover dynamics have been previously derived for several specific regular population structures, these models lack generality. In contrast, so-called pair approximations have been touted as a general technique for rapidly approximating the flow of information in spatially structured populations with a constant (or nearly constant) degree of nodal connectivities, such as in epidemiological and ecological studies. In this work, we reformulate takeover time analysis in terms of the well-known Susceptible-Infectious-Susceptible model of disease spread and adapt the pair approximation for takeover dynamics. Our results show that the pair approximation, as originally formulated, is insufficient for approximating pre-equilibrium dynamics, since it does not properly account for the interaction between the size and shape of the local neighborhood and the population size. After parameterizing the pair approximation to account for these influences, we demonstrate that the resulting pair approximation can serve as a general and rapid approximator for takeover dynamics on a variety of spatially-explicit regular interaction topologies with varying population sizes and varying uptake and reversion probabilities. Strengths, limitations, and potential applications of the pair approximation to evolutionary computation are discussed.
在复杂适应系统中,交互网络的拓扑特性对整个系统中信息的流动速率具有强大的支配性影响。例如,在流行病学模型中,潜在接触网络的结构对传染病在人群中的传播速率有着显著影响。同样,在进化系统中,潜在交配交互的拓扑结构(即种群结构)会影响遗传信息的流动速率,进而影响选择压力。在进化算法中,一种常用的量化选择压力的方法是通过分析单个有利突变在种群中传播的动态过程(也称为接管时间分析)。虽然之前已经针对几种特定的规则种群结构推导出了接管动态模型,但这些模型缺乏通用性。相比之下,所谓的对近似法被吹捧为一种通用技术,可用于快速近似具有恒定(或近乎恒定)节点连接度的空间结构化种群中的信息流动,比如在流行病学和生态学研究中。在这项工作中,我们根据著名的疾病传播易感 - 感染 - 易感模型重新构建接管时间分析,并将对近似法应用于接管动态。我们的结果表明,最初形式的对近似法不足以近似平衡前的动态,因为它没有正确考虑局部邻域的大小和形状与种群大小之间的相互作用。在对该对近似法进行参数化以考虑这些影响之后,我们证明,由此得到的对近似法可作为一种通用且快速的近似方法,用于在各种具有不同种群大小、不同吸收和回复概率的空间明确的规则交互拓扑上进行接管动态分析。我们还讨论了对近似法在进化计算中的优点、局限性和潜在应用。