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使用时变响应系数探索渗透适应对糖酵解的影响。

Exploring the impact of osmoadaptation on glycolysis using time-varying response-coefficients.

作者信息

Kühn Clemens, Petelenz Elzbieta, Nordlander Bodil, Schaber Jörg, Hohmann Stefan, Klipp Edda

机构信息

Computational Systems Biology Group, Max Planck Institute for Molecular Genetics, Ihnestrasse 63-73, 14195 Berlin, Germany.

出版信息

Genome Inform. 2008;20:77-90.

Abstract

We present a model of osmoadaptation in S. cerevisiae based on existing experimental and theoretical work. In order to investigate the impact of osmoadaptation on glycolysis, this model focuses on the interactions between glycolysis and osmoadaptation, namely the production of glycerol and its influence on flux towards pyruvate. Evaluation of this model shows that, depending on initial relations between glycerol and pyruvate production, the increased glycerol production can have a substantial negative effect on the pyruvate production rate. Existing experimental data and a detailed analysis of the model lead to the suggestion of an interaction between activated Hog1 and activators of glycolysis such as Pfk26.

摘要

我们基于现有的实验和理论工作,提出了一种酿酒酵母渗透适应模型。为了研究渗透适应对糖酵解的影响,该模型聚焦于糖酵解与渗透适应之间的相互作用,即甘油的产生及其对丙酮酸通量的影响。对该模型的评估表明,根据甘油和丙酮酸产生之间的初始关系,甘油产量的增加可能对丙酮酸产生速率产生显著的负面影响。现有的实验数据和对该模型的详细分析表明,活化的Hog1与糖酵解激活剂(如Pfk26)之间存在相互作用。

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