Suppr超能文献

阿维链霉菌NBRC14893来源的β-L-阿拉伯吡喃糖苷酶的结晶及初步晶体学分析

Crystallization and preliminary crystallographic analysis of beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893.

作者信息

Fujimoto Zui, Ichinose Hitomi, Harazono Koichi, Honda Mariko, Uzura Atsuko, Kaneko Satoshi

机构信息

Protein Research Unit, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt 6):632-4. doi: 10.1107/S1744309109017230. Epub 2009 May 23.

Abstract

Beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893 is a monomeric protein consisting of a catalytic domain belonging to glycosyl hydrolase family 27, an unknown domain and a substrate-binding domain belonging to carbohydrate-binding module family 13. The complete enzyme (residues 45-658) has successfully been cloned and homologously expressed in the Streptomyces expression system. beta-L-Arabinopyranosidase was crystallized by the sitting-drop vapour-diffusion method. The crystals diffracted to 1.6 A resolution and belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 68.2, b = 98.9, c = 181.3 A. The Matthews coefficient was calculated to be 2.38 A(3) Da(-1).

摘要

来自阿维链霉菌NBRC14893的β-L-阿拉伯吡喃糖苷酶是一种单体蛋白,由属于糖基水解酶家族27的催化结构域、一个未知结构域和属于碳水化合物结合模块家族13的底物结合结构域组成。完整的酶(45-658位氨基酸残基)已成功克隆并在链霉菌表达系统中进行同源表达。β-L-阿拉伯吡喃糖苷酶通过坐滴气相扩散法结晶。晶体衍射分辨率达到1.6 Å,属于空间群P2(1)2(1)2(1),晶胞参数a = 68.2,b = 98.9,c = 181.3 Å。马修斯系数计算为2.38 Å(3) Da(-1)。

相似文献

1
Crystallization and preliminary crystallographic analysis of beta-L-arabinopyranosidase from Streptomyces avermitilis NBRC14893.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jun 1;65(Pt 6):632-4. doi: 10.1107/S1744309109017230. Epub 2009 May 23.
2
Crystallization and preliminary crystallographic analysis of exo-alpha-1,5-L-arabinofuranosidase from Streptomyces avermitilis NBRC14893.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Nov 1;64(Pt 11):1007-9. doi: 10.1107/S1744309108029692. Epub 2008 Oct 25.
3
Crystallization and preliminary crystallographic analysis of the glycoside hydrolase family 115 α-glucuronidase from Streptomyces pristinaespiralis.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jan 1;67(Pt 1):68-71. doi: 10.1107/S1744309110043721. Epub 2010 Dec 22.
4
A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27.
J Biol Chem. 2009 Sep 11;284(37):25097-106. doi: 10.1074/jbc.M109.022723. Epub 2009 Jul 16.
5
Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Dec 1;65(Pt 12):1274-6. doi: 10.1107/S1744309109043395. Epub 2009 Nov 27.
6
Characterization of a modular enzyme of exo-1,5-alpha-L-arabinofuranosidase and arabinan binding module from Streptomyces avermitilis NBRC14893.
Appl Microbiol Biotechnol. 2008 Sep;80(3):399-408. doi: 10.1007/s00253-008-1551-x. Epub 2008 Jul 30.
8
Crystallization and preliminary X-ray analysis of a family 51 glycoside hydrolase, the alpha-l-arabinofuranosidase from Geobacillus stearothermophilus T-6.
Acta Crystallogr D Biol Crystallogr. 2003 May;59(Pt 5):913-5. doi: 10.1107/s0907444903004037. Epub 2003 Apr 25.
9
Preliminary X-ray diffraction analysis of a thermophilic β-1,3-1,4-glucanase from Clostridium thermocellum.
Acta Crystallogr F Struct Biol Commun. 2014 Jul;70(Pt 7):946-8. doi: 10.1107/S2053230X14009376. Epub 2014 Jun 19.

引用本文的文献

1
A comparison of gas stream cooling and plunge cooling of macromolecular crystals.
J Appl Crystallogr. 2019 Aug 23;52(Pt 5):1222-1232. doi: 10.1107/S1600576719010318. eCollection 2019 Oct 1.
2
Arabinogalactan proteins: focus on carbohydrate active enzymes.
Front Plant Sci. 2014 Jun 11;5:198. doi: 10.3389/fpls.2014.00198. eCollection 2014.
4
Crystallization of selenomethionyl exo-beta-1,3-galactanase from the basidiomycete Phanerochaete chrysosporium.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Dec 1;65(Pt 12):1274-6. doi: 10.1107/S1744309109043395. Epub 2009 Nov 27.
5
A beta-l-Arabinopyranosidase from Streptomyces avermitilis is a novel member of glycoside hydrolase family 27.
J Biol Chem. 2009 Sep 11;284(37):25097-106. doi: 10.1074/jbc.M109.022723. Epub 2009 Jul 16.

本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.
Nucleic Acids Res. 2009 Jan;37(Database issue):D233-8. doi: 10.1093/nar/gkn663. Epub 2008 Oct 5.
3
pTONA5: a hyperexpression vector in Streptomycetes.
Protein Expr Purif. 2008 Dec;62(2):244-8. doi: 10.1016/j.pep.2008.09.001. Epub 2008 Sep 11.
4
Characterization of an endo-beta-1,6-Galactanase from Streptomyces avermitilis NBRC14893.
Appl Environ Microbiol. 2008 Apr;74(8):2379-83. doi: 10.1128/AEM.01733-07. Epub 2008 Feb 29.
5
The biology of arabinogalactan proteins.
Annu Rev Plant Biol. 2007;58:137-61. doi: 10.1146/annurev.arplant.58.032806.103801.
6
Characterization of an exo-beta-1,3-D-galactanase from Streptomyces avermitilis NBRC14893 acting on arabinogalactan-proteins.
Biosci Biotechnol Biochem. 2006 Nov;70(11):2745-50. doi: 10.1271/bbb.60365. Epub 2006 Nov 7.
7
An exo-beta-1,3-galactanase having a novel beta-1,3-galactan-binding module from Phanerochaete chrysosporium.
J Biol Chem. 2005 Jul 8;280(27):25820-9. doi: 10.1074/jbc.M501024200. Epub 2005 May 2.
8
Rational affinity purification of native Streptomyces family 10 xylanase.
J Biotechnol. 2004 May 27;110(2):137-42. doi: 10.1016/j.jbiotec.2004.01.014.
9
Flash-cooling of macromolecular crystals in a capillary to overcome increased mosaicity.
Acta Crystallogr D Biol Crystallogr. 2004 Jan;60(Pt 1):39-45. doi: 10.1107/s0907444903021188. Epub 2003 Dec 18.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验