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可变剪接作为人类疾病的治疗靶点。

Alternative splicing as a therapeutic target for human diseases.

作者信息

Dery Kenneth J, Gusti Veronica, Gaur Shikha, Shively John E, Yen Yun, Gaur Rajesh K

机构信息

Division of Molecular Biology, Beckman Research Institute of the City of Hope, Duarte, CA, USA.

出版信息

Methods Mol Biol. 2009;555:127-44. doi: 10.1007/978-1-60327-295-7_10.

DOI:10.1007/978-1-60327-295-7_10
PMID:19495693
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3076216/
Abstract

The majority of eukaryotic genes undergo alternative splicing, an evolutionarily conserved phenomenon, to generate functionally diverse protein isoforms from a single transcript. The fact that defective pre-mRNA splicing can generate non-functional and often toxic proteins with catastrophic effects, accurate removal of introns and joining of exons is vital for cell homeostasis. Thus, molecular tools that could either silence a disease-causing gene or regulate its expression in trans will find many therapeutic applications. Here we present two RNA-based approaches, namely RNAi and theophylline-responsive riboswitch that can regulate gene expression by loss-of-function and modulation of splicing, respectively. These strategies are likely to continue to play an integral role in studying gene function and drug discovery.

摘要

大多数真核基因会经历可变剪接,这是一种进化上保守的现象,能从单个转录本产生功能多样的蛋白质异构体。由于有缺陷的前体mRNA剪接会产生无功能且通常有毒的蛋白质,从而带来灾难性影响,因此准确去除内含子和连接外显子对细胞稳态至关重要。因此,能够沉默致病基因或反式调节其表达的分子工具将有许多治疗应用。在此,我们展示了两种基于RNA的方法,即RNA干扰和茶碱响应性核糖开关,它们分别可以通过功能丧失和剪接调控来调节基因表达。这些策略可能会继续在基因功能研究和药物发现中发挥不可或缺的作用。

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1
Alternative splicing as a therapeutic target for human diseases.可变剪接作为人类疾病的治疗靶点。
Methods Mol Biol. 2009;555:127-44. doi: 10.1007/978-1-60327-295-7_10.
2
Sequestering of the 3' splice site in a theophylline-responsive riboswitch allows ligand-dependent control of alternative splicing.3'剪接位点在茶碱反应性核糖开关中的隔离允许对可变剪接进行配体依赖性控制。
Oligonucleotides. 2008 Spring;18(1):93-9. doi: 10.1089/oli.2007.0107.
3
Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing.配体诱导的分支点序列隔离允许对剪接进行条件控制。
BMC Mol Biol. 2008 Feb 12;9:23. doi: 10.1186/1471-2199-9-23.
4
Artificial control of gene expression in mammalian cells by modulating RNA interference through aptamer-small molecule interaction.通过适体-小分子相互作用调节RNA干扰对哺乳动物细胞基因表达进行人工控制。
RNA. 2006 May;12(5):710-6. doi: 10.1261/rna.2299306. Epub 2006 Apr 10.
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Modulating endogenous gene expression of mammalian cells via RNA-small molecule interaction.通过RNA-小分子相互作用调控哺乳动物细胞的内源性基因表达。
Biochem Biophys Res Commun. 2008 Nov 7;376(1):169-73. doi: 10.1016/j.bbrc.2008.08.112. Epub 2008 Aug 31.
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An artificial riboswitch for controlling pre-mRNA splicing.一种用于控制前体信使核糖核酸剪接的人工核糖开关。
RNA. 2005 Nov;11(11):1667-77. doi: 10.1261/rna.2162205.
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Alternative splicing as a biomarker and potential target for drug discovery.可变剪接作为生物标志物及药物研发的潜在靶点。
Acta Pharmacol Sin. 2015 Oct;36(10):1212-8. doi: 10.1038/aps.2015.43. Epub 2015 Jun 15.
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Cancer-Associated Perturbations in Alternative Pre-messenger RNA Splicing.癌症相关的前体信使核糖核酸可变剪接扰动
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Alternative splicing factor or splicing factor-2 plays a key role in intron retention of the endoglin gene during endothelial senescence.剪接因子或剪接因子-2 在血管内皮细胞衰老过程中内 Engl 基因的内含子保留中起关键作用。
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BMC Bioinformatics. 2021 Jun 28;22(1):350. doi: 10.1186/s12859-021-04243-z.
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A serine-arginine-rich (SR) splicing factor modulates alternative splicing of over a thousand genes in Toxoplasma gondii.一种富含丝氨酸-精氨酸(SR)的剪接因子可调节弓形虫中一千多个基因的可变剪接。
Nucleic Acids Res. 2015 May 19;43(9):4661-75. doi: 10.1093/nar/gkv311. Epub 2015 Apr 13.
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IRF-1 regulates alternative mRNA splicing of carcinoembryonic antigen-related cell adhesion molecule 1 (CEACAM1) in breast epithelial cells generating an immunoreceptor tyrosine-based inhibition motif (ITIM) containing isoform.干扰素调节因子1(IRF-1)调控乳腺上皮细胞中癌胚抗原相关细胞黏附分子1(CEACAM1)的可变mRNA剪接,产生一种含有免疫受体酪氨酸抑制基序(ITIM)的异构体。
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本文引用的文献

1
Splicing regulation: from a parts list of regulatory elements to an integrated splicing code.剪接调控:从调控元件的清单到整合的剪接密码
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Sequestering of the 3' splice site in a theophylline-responsive riboswitch allows ligand-dependent control of alternative splicing.3'剪接位点在茶碱反应性核糖开关中的隔离允许对可变剪接进行配体依赖性控制。
Oligonucleotides. 2008 Spring;18(1):93-9. doi: 10.1089/oli.2007.0107.
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Ligand-induced sequestering of branchpoint sequence allows conditional control of splicing.配体诱导的分支点序列隔离允许对剪接进行条件控制。
BMC Mol Biol. 2008 Feb 12;9:23. doi: 10.1186/1471-2199-9-23.
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Regulation of alternative splicing: more than just the ABCs.可变剪接的调控:远不止ABC那么简单。
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Predicting siRNA efficiency.预测小干扰RNA(siRNA)的效率。
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The gene encoding the splicing factor SF2/ASF is a proto-oncogene.编码剪接因子SF2/ASF的基因是一种原癌基因。
Nat Struct Mol Biol. 2007 Mar;14(3):185-93. doi: 10.1038/nsmb1209. Epub 2007 Feb 18.
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Alternative splicing: therapeutic target and tool.可变剪接:治疗靶点与工具
Prog Mol Subcell Biol. 2006;44:47-64. doi: 10.1007/978-3-540-34449-0_3.
8
siRNA efficiency: structure or sequence-that is the question.小干扰RNA(siRNA)的效率:结构还是序列——这才是问题所在。
J Biomed Biotechnol. 2006;2006(4):83757. doi: 10.1155/JBB/2006/83757.
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RNA interference: a potential therapeutic tool for silencing splice isoforms linked to human diseases.RNA干扰:一种沉默与人类疾病相关剪接异构体的潜在治疗工具。
Biotechniques. 2006 Apr;Suppl:15-22. doi: 10.2144/000112165.
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Cleavage of the siRNA passenger strand during RISC assembly in human cells.人细胞中RNA诱导沉默复合体(RISC)组装过程中siRNA过客链的切割。
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