Matsushima Akihiro, Kobayashi Norio, Mochizuki Yoshiki, Ishii Manabu, Kawaguchi Shuji, Endo Takaho A, Umetsu Ryo, Makita Yuko, Toyoda Tetsuro
Bioinformatics and Systems Engineering division (BASE), RIKEN (The Institute of Physical and Chemical Research), 1-7-22 Suehiro, Tsurumi, Yokohama, Kanagawa 230-0045, Japan.
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W57-62. doi: 10.1093/nar/gkp404. Epub 2009 Jun 15.
OmicBrowse is a genome browser designed as a scalable system for maintaining numerous genome annotation datasets. It is an open source tool capable of regulating multiple user data access to each dataset to allow multiple users to have their own integrative view of both their unpublished and published datasets, so that the maintenance costs related to supplying each collaborator exclusively with their own private data are significantly reduced. OmicBrowse supports DAS1 imports and exports of annotations to Internet site servers worldwide. We also provide a data-download named OmicDownload server that interactively selects datasets and filters the data on the selected datasets. Our OmicBrowse server has been freely available at http://omicspace.riken.jp/ since its launch in 2003. The OmicBrowse source code is downloadable from http://sourceforge.net/projects/omicbrowse/.
OmicBrowse是一款基因组浏览器,设计为一个可扩展系统,用于维护众多基因组注释数据集。它是一个开源工具,能够管理多个用户对每个数据集的数据访问,使多个用户能够对自己未发表和已发表的数据集拥有各自的综合视图,从而显著降低专门为每个合作者提供其私有数据所产生的维护成本。OmicBrowse支持向全球互联网站点服务器进行注释的DAS1导入和导出。我们还提供了一个名为OmicDownload的服务器,用于交互式选择数据集并对所选数据集的数据进行过滤。自2003年推出以来,我们的OmicBrowse服务器可在http://omicspace.riken.jp/上免费获取。OmicBrowse的源代码可从http://sourceforge.net/projects/omicbrowse/下载。